regulator of nonsense transcripts 1 homolog [Drosophila

LOCUS       XP_016995203            1177 aa            linear   INV 09-DEC-2024
            takahashii].
ACCESSION   XP_016995203
VERSION     XP_016995203.2
DBLINK      BioProject: PRJNA1194641
DBSOURCE    REFSEQ: accession XM_017139714.3
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 18, 2021 this sequence version replaced XP_016995203.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Drosophila takahashii"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     Protein         1..1177
                     /product="regulator of nonsense transcripts 1 homolog"
                     /calculated_mol_wt=129528
     Region          101..252
                     /region_name="UPF1_Zn_bind"
                     /note="RNA helicase (UPF2 interacting domain); pfam09416"
                     /db_xref="CDD:401391"
     Region          305..393
                     /region_name="1B_UPF1-like"
                     /note="1B domain of eukaryotic UPF1 RNA helicase and
                     related proteins; cd21407"
                     /db_xref="CDD:394815"
     Site            order(339..341,359)
                     /site_type="other"
                     /note="nucleic acid substrate binding site [nucleotide
                     binding]"
                     /db_xref="CDD:394815"
     Region          358..883
                     /region_name="TIGR00376"
                     /note="DNA helicase, putative"
                     /db_xref="CDD:273041"
     Region          454..687
                     /region_name="DEXXQc_UPF1"
                     /note="DEXXQ-box helicase domain of UPF1; cd18039"
                     /db_xref="CDD:350797"
     Site            order(454..456,459,478..484,649,686..687)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350797"
     Site            order(506..508,530..533,584,600,602,653,655)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:350797"
     CDS             1..1177
                     /gene="Upf1"
                     /coded_by="XM_017139714.3:313..3846"
                     /db_xref="GeneID:108056075"
ORIGIN      
        1 msvdtyapss alsfldmddn ellpgadtqp tqydyrdftm pstsqsqtqn dqlelqprrt
       61 dpssssvhpr lasitndlad lqfeeeddea ggsyvkelpp hackycgihd patvvmcnnc
      121 rkwfcngrgs tsgshiinhl vrakhrevtl hgegplgeti lecyscgvrn vfvlgfipak
      181 adsvvvllcr qpcaaqnslk dmnwdqeqwk pliadrcflp wlvkqpseqg qlrarqisaa
      241 qinkleelwk dnieatfqdl ekpgidsepa qvllryedgy qyektfgplv rleadydkkl
      301 kesatqenie vrwdvglnkk tiayftlakt dsdmklmhgd elrlryvgem ynpwseighv
      361 ikvpdnfgdd vglelktssn apvkctgnfs vdfiwkctsf drmtralrnf amdrnsvsny
      421 iysrllghgr pdandevlfr gpqpklysap hlpdlnrsqv yavkhalqrp lsliqgppgt
      481 gktvtsativ yqlvkqhggt vlvcapsnta vdqltekihr tnlkvvrvca ksreaidspv
      541 sflalhnqir nmetnselkk lqqlkdetge lssadekryr slkrgtenql leaadvicct
      601 cvgagdgrls rikftsilid esmqstepec mvpvvlgakq lilvgdhcql gpvvmckkaa
      661 raglsqslfe rlvvlgirpf rlevqyrmhp elsqfpsnff yegslqngvc aedrrlkldf
      721 pwpqperpmf flvtqgqeei agsgtsflnr teaanvekit trflkagikp eqigiitpye
      781 gqraylvqym qyqgslhsrl yqeieiasvd afqgrekdii imscvrsner qgigflndpr
      841 rlnvaltrak ygiiivgnpk vlakqqlwnh llnfykdrkv lvegslnnlk eslihfqkpk
      901 klvnsmniga hfmstmmada kevmvpgsiy drsggyggqg rqmhqnqamn ggpyggaplg
      961 ygvpsaansm mggnnnfggg gtagggggng pswaaahlhh dsigyisneh gaaalgnmpv
     1021 pvgmfmnmsn lpprfynqhq qaimaakqnr amqqqqsgnf spglaitgga agalagnnkk
     1081 sqktvgksra igaaeargaa aggggagqan stagtpfsqq paplslqmtq psgfalsqqp
     1141 elsqdfgqis qmdgllsqdv afnvsgersl nqfsqpy