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LOCUS XP_013097908 1892 aa linear INV 02-SEP-2023 ACCESSION XP_013097908 VERSION XP_013097908.1 DBLINK BioProject: PRJNA1009844 DBSOURCE REFSEQ: accession XM_013242454.2 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1892 /organism="Stomoxys calcitrans" /db_xref="taxon:35570" /chromosome="4" Protein 1..1892 /product="DNA-directed RNA polymerase II subunit RPB1" /calculated_mol_wt=209248 Region 14..867 /region_name="RNAP_II_RPB1_N" /note="Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain; cd02733" /db_xref="CDD:259848" Site order(21,25,28..29,76..78,80,91,241,243,245,250..251,309, 330,333..334,337,344,347,349..356,361..363,375,378..379, 448,450,452,456..457,459..460,471..472,474,477,486..489, 491,493,495,498..499,502,505..506,509..510,515,530..531, 534,671..672,760,765..766,771,774..775,784..785,815..816, 818..820,823..824,827..828,830..832,835..836,838..839, 852..853,856,860) /site_type="other" /note="RPB1 - RPB2 interface [polypeptide binding]" /db_xref="CDD:259848" Site order(21..34,39,78..103,236..255,293..299,302..310, 329..345,347..351) /site_type="other" /note="clamp" /db_xref="CDD:259848" Site order(39..43,74,253,255,261..266,268..270,272..273,276, 280,296,299..300,303..304,313..318,321..326,328,333,338, 409,412,416..419,421..423) /site_type="other" /note="RPB1-TFIIB interface [polypeptide binding]" /db_xref="CDD:259848" Site order(66,69,76,79) /site_type="other" /note="Zn-binding [ion binding]" /db_xref="CDD:259848" Site order(99..100,337,342,349,355,451..453,486,488,490, 849..850) /site_type="active" /note="active site region [active]" /db_xref="CDD:259848" Region 887..1070 /region_name="RNA_pol_Rpb1_6" /note="RNA polymerase Rpb1, domain 6; pfam04992" /db_xref="CDD:461511" Region 1049..1467 /region_name="RNAP_II_Rpb1_C" /note="Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain; cd02584" /db_xref="CDD:132720" Site order(1068..1069,1073,1076,1459,1462..1465,1467) /site_type="other" /note="Rpb1 - Rpb6 interaction site [polypeptide binding]" /db_xref="CDD:132720" Site order(1073..1103,1105..1135,1141..1155,1291,1301..1311, 1317..1378,1381..1400,1402..1416) /site_type="active" /note="cleft [active]" /db_xref="CDD:132720" Site order(1077,1080,1281,1285,1431,1441..1443,1449..1450,1452, 1454,1459) /site_type="other" /note="Rpb1 - Rpb2 interaction site [polypeptide binding]" /db_xref="CDD:132720" Site order(1122,1407,1424..1425,1428) /site_type="DNA binding" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132720" Site order(1339,1345..1346,1348,1358..1364,1366,1386, 1397..1398,1400) /site_type="other" /note="Rpb1 - Rpb5 interaction site [polypeptide binding]" /db_xref="CDD:132720" Site 1416..1457 /site_type="active" /note="clamp [active]" /db_xref="CDD:132720" Region <1777..>1890 /region_name="PHA03291" /note="envelope glycoprotein I; Provisional" /db_xref="CDD:223033" CDS 1..1892 /gene="LOC106080855" /coded_by="XM_013242454.2:458..6136" /db_xref="GeneID:106080855" ORIGIN 1 matndskapl rqvkrvqfgi lspdeirrms vteggvqfae tmeggrpklg glmdprqgvi 61 drtsrcqtca gnmtecpghf ghidlakpvf higfitktik ilrcvcfycs kmlvspsnpk 121 ikevvlktkg qprkrlayvy dlckgkkice ggedmdmtkd gqpadpnkkp ghggcghyqp 181 slrrtgldlt aewkhvneds qekkiqvtae rvweilkhit deecfvmgmd pkyarpdwmi 241 vtvlpvppla vrpavvmfga aknqddlthk lsdiikanne lrkneacgaa ahvilenikm 301 lqfhvatlvd ndmpgmpram qksgkplkai ksrlkgkegr irgnlmgkrv dfsartvitp 361 dpnlridqvg vprsiaqnlt fpelvtpfni drmqelvrrg nsqypgakyi vrdngeridl 421 rfhpkpsdlh lqcgykverh lrdddlvifn rqptlhkmsm mghrvkvlpw stfrmnlsct 481 spynadfdgd emnlhvpqsm etraevenih vtprqiitpq ankpvmgivq dtltavrkmt 541 krdvfitreq mmnllmflpt wdgkmpqpci lkpkplwtgk qiftliipgn vnmirthsth 601 pddeddgpyk wispgdtkvm vehgelimgi lckktlgtsa gsllhivfle lgheiagrfy 661 gniqtvinnw llleghsigi gdtiadpqty neiqmaikka kddvinviqk ahnmeleptp 721 gntlrqtfen qvnrilndar dktggsakks lteynslkam vvsgskgsni nisqviacvg 781 qqnvegkrip ygfrkrtlph fikddygpes rgfvensyla gltpsefyfh amggreglid 841 tavktaetgy iqrrlikame svmvnydgtv rnsvgqliql rygedglage tvefqnlptv 901 klsnksfekr fkfdwsnery mrkvftdevi kelsesgnal peleiewdql crdrealrei 961 fpngdskvvl pcnlqrmiwn vqkifhinkr mptdlsplrv ingvrdllqr cvivvgndrl 1021 skqanenatl lfqclvrstl ctkyvaeefr lsteafewli geietrfqqa qanpgemvga 1081 laaqslgepa tqmtlntfhf agvssknvtl gvprlkeiin iskkpkapsl tvfltggaar 1141 daekaknvlc rlehttlrkv tantaiyydp dpqrtviaed qefvnvyyem pdfdptrisp 1201 wllrieldrk rmtdkkltme qiaekinagf gddlncifnd dnadklvlri rimnneenkf 1261 qdedeavdkm eddmflrcie anmlsdmtlq gieaigkvym hlpqtdskkr iiitetgefk 1321 aigewlletd gtsmmkvlse rdvdpvrtss ndiceifqvl gieavrksve kemnavlqfy 1381 glyvnyrhla llcdvmtakg hlmaitrhgi nrqdtgalmr csfeetvdvl ldasahaetd 1441 pmrgvsenii mgqlpkmgtg cfdllldaek crygieiant mgssilggsg mffgavstps 1501 msppmtpwqn cgtpryfsps gqmsgmtpgg psfspsaase asgmspswsp ahpgsspssp 1561 gppmspffpp spsvspsysp tsptytassp ggaspsyspl spsysptspa fgstspryss 1621 ttpnfnpqst gyspsnsgys psspvyspts pfhhssspsy tgsggsnmys ptsaysptss 1681 nyspnspsys ptspsyspss psyspsspcy sptspsysps sptytpvtps yspssphyss 1741 sphyspaspa ysqtgvkysp tspkysppsp sydgsagspq ytpgspqysp aspkysptsp 1801 lysptspqhs panqysptgs sysatsprys pnnmsvyspg stkysptspt ytptrnyspa 1861 spmysptaps hgysptspay spssptyeds ee