Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_714094 1107 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_714094 VERSION XM_714094.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1107) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1107) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1107) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1107) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1107) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1107) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714094.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1107 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1107 /locus_tag="CAALFM_C603380WA" /db_xref="GeneID:3639231" CDS 1..1107 /locus_tag="CAALFM_C603380WA" /note="S. cerevisiae ortholog Hek2/Khd1 is a putative RNA binding protein involved in the asymmetric localization of ASH1 mRNA; Hap43-induced gene" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_719187.1" /db_xref="CGD:CAL0000175912" /db_xref="GeneID:3639231" /translation="MTESLFDTNFTSENESKPEPTQQQQQQSTQQTSQQQQQQQPSSS TLTTSIVDQSSTLPSLQDKSNIDALINYRVLVSAKEAGCLIGTNGQVIDSIRNETNTK AGISRLIPGSHERILTVSGKLDDCAKALSYFAQALINANIESYNYFPLKQLSSTPNTE ETTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISMIASKSFLPGSNERLVELQGTVD DLYDSLRIISRCLIEDFSSIVGTTYYVPRGNTYNNNHSHSHSHNNTNNTNINNNNNNN NNTHGSGGNKTTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVF TITGSSHAVDKAKQMIYQNFKREEERRKNEESRV" misc_feature 208..417 /locus_tag="CAALFM_C603380WA" /note="K homology (KH) RNA-binding domain, type I; Region: KH-I; cl00098" /db_xref="CDD:469614" misc_feature 493..696 /locus_tag="CAALFM_C603380WA" /note="K homology (KH) RNA-binding domain, type I; Region: KH-I; cl00098" /db_xref="CDD:469614" misc_feature 865..1053 /locus_tag="CAALFM_C603380WA" /note="K homology (KH) RNA-binding domain, type I; Region: KH-I; cl00098" /db_xref="CDD:469614" ORIGIN 1 atgactgaat ctttatttga taccaatttc acttcagaaa acgaatctaa acctgaacca 61 actcaacaac aacaacaaca atcaactcaa caaacatctc aacaacaaca acaacaacag 121 ccatcgtctt ctacattaac aacatctatt gttgatcaat cttcaacttt accttcatta 181 caagataaat ccaatattga tgccttgatc aattatcgag tattagtttc cgccaaagaa 241 gcaggatgtc ttattggtac taatggacaa gttattgatt caattagaaa tgaaaccaat 301 actaaagccg ggatttctcg attaattcct ggtagtcatg aacgaatttt aactgttctg 361 gggaaattag atgattgtgc taaagcatta agttattttg ctcaagcttt aattaatgct 421 aatattgaaa gttataatta tttccccctt aaacaattat catcaactcc aaatactgaa 481 gaaacaacaa ttttaagatt attaatcccc aattctcaaa tggggacttt aattggttct 541 aaaggtgcta gaatacaaca attacaaaat aattttaata tttctatgat tgcttcaaaa 601 tcatttttac caggttcaaa tgaaagatta gttgaattac aaggtactgt tgatgattta 661 tatgatagtt taagaataat ttcaagatgt cttattgaag atttttcttc aattgttggt 721 accacttatt atgttcctcg tggtaacacc tacaacaata atcatagcca tagccatagc 781 cacaacaaca ccaacaacac caacatcaat aacaataaca acaataataa taatacacac 841 ggtagtggcg gtaataaaac cactgatact atatcttttc ctaatgatat agttggagca 901 ttaataggga aaagaggtag tcgtattgat ggagttagaa aagttagtgg tgctatgatt 961 gctattagtg aagcaatcga aggtgaaaat gaacgagttt tcactattac aggatcatct 1021 catgctgtag ataaagctaa acaaatgatt tatcaaaatt ttaaaagaga agaagaaaga 1081 agaaaaaatg aagaatcaag agtataa