Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_714084 1440 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_714084 VERSION XM_714084.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1440) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1440) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1440) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1440) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1440) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1440) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714084.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1440 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1440 /locus_tag="CAALFM_C603290WA" /db_xref="GeneID:3639195" CDS 1..1440 /locus_tag="CAALFM_C603290WA" /note="Ortholog(s) have methylated histone binding, transcription factor binding activity" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_719177.2" /db_xref="CGD:CAL0000188824" /db_xref="GeneID:3639195" /translation="MSRKSGRRGYNSDTSTASNRGSGSREPREEEIVDLEEEEEEEED LIEEEGGEDEEDEITRCICGQDELTNDSINPELSTFLKRTYKIEIDQGLFIQCEKCSV WQHGYCVGLFESHDVPDEYWCESCKPEFHILVNNDGYSKRTLYKPVNDKRKKLEQMTF KNNETSHSTRRRGGKNERNTPQQDTSSNIKDKRKERRHHHHHHNIDEDDDEYNEQLKR ALRESARESGVKLSESESNERGNGNSVKREDNKSDGNNSSGREGSRGNGSRKRETSRR ENADNSDSKRLKVEQSDHPSGSELNENSEQELGSGSEGSRSKRRGVAGAGAGAGSTKT TRKKKSTPPRSSTNNNNNNNKKQDDSSNETNSLGPTKEELIQQPSKPRYVNDKSSIFE LRKRTIAILEWLGRSQVELQEEKQQKLELFSFISDDDEKEGSSNSSKENANADALALK ETFDENLLLMEQLTERILAWQDTFGKYAV" misc_feature 178..378 /locus_tag="CAALFM_C603290WA" /note="PHD finger superfamily; Region: PHD_SF; cl22851" /db_xref="CDD:473978" misc_feature order(178..180,280..291,301..303,361..363) /locus_tag="CAALFM_C603290WA" /note="histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:276966" misc_feature 508..>963 /locus_tag="CAALFM_C603290WA" /note="transcription termination factor Rho; Provisional; Region: PRK12678" /db_xref="CDD:237171" ORIGIN 1 atgtcacgta aatcaggaag aagaggatat aattcggata ctagtactgc aagcaatcga 61 gggagtggaa gtagagaacc acgagaagaa gaaattgttg atttggaaga agaagaagaa 121 gaggaagagg acttgattga agaagaagga ggagaagacg aagaagatga gattactcgt 181 tgtatttgtg gacaagacga attaactaac gattccatta atcctgaatt atcgactttt 241 ttgaaaagaa catacaaaat agaaatagat caaggtttat ttattcaatg tgagaaatgt 301 tcagtttggc aacacggata ttgtgtggga ttatttgaaa gtcatgatgt acccgatgaa 361 tattggtgtg aatcatgtaa accagaattc cacatccttg tcaataatga tggatattcg 421 aaaagaacat tatataagcc ggtcaatgat aaaaggaaga aacttgaaca aatgactttc 481 aaaaacaatg aaacaagcca tagtacaagg agaagaggag gtaaaaatga acgaaacacc 541 ccacaacaag acacaagttc taatatcaag gataaacgga aagaacgaag acaccatcat 601 caccaccata acattgatga agatgacgat gaatacaatg aacaattgaa aagagcatta 661 agggaaagtg cccgagaatc aggggtcaaa ttaagtgaat cagaatcaaa tgaaaggggc 721 aatgggaatt cagttaaaag ggaggacaat aagagtgatg ggaataatag tagtggcaga 781 gaaggttcaa gaggtaatgg atcaaggaaa agagagacca gtcggagaga aaatgccgat 841 aatagcgatt caaaacgtct taaagttgaa caatctgatc atcctagtgg ttcagagttg 901 aatgagaatt cagaacaaga acttgggtca ggaagtgagg ggtctagaag taaaagaagg 961 ggtgtggctg gcgctggtgc aggtgctggt agtacgaaaa ccactaggaa aaagaagagt 1021 acaccaccaa gactgtccac aaacaataat aataataaca acaaaaagca agatgattca 1081 tctaatgaaa ccaattcatt gggaccaact aaagaagaat taattcaaca accatctaaa 1141 ccacgttatg taaatgataa atcttcgatt tttgaattac ggaaaagaac aatagcaata 1201 ttagaatggc ttggtcgttc tcaagttgaa cttcaggaag aaaagcaaca aaaattagaa 1261 ttattttcat ttataagtga tgatgatgaa aaagaaggat catcaaattc ttctaaagaa 1321 aatgctaatg ctgatgccct tgcattaaaa gaaacatttg atgagaattt actactaatg 1381 gaacaactta cagaacgaat cttagcatgg caagatacat ttggtaaata tgctgtttag