Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_714073 2991 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_714073 VERSION XM_714073.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2991) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2991) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2991) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2991) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2991) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2991) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714073.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2991 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2991 /locus_tag="CAALFM_C603180CA" /db_xref="GeneID:3639261" CDS 1..2991 /locus_tag="CAALFM_C603180CA" /note="Ortholog(s) have protein binding, bridging, ubiquitin protein ligase binding activity and role in positive regulation of ubiquitin-dependent endocytosis, regulation of intracellular transport" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_719166.2" /db_xref="CGD:CAL0000176604" /db_xref="GeneID:3639261" /translation="MNIPNSPLFAPQQLSNHNSTPTNSSNDKGTTITSTPTSKNHLNK SSSSSLAVLTPTLPEKPTVSTSSLAVYIVPSEQNLFVQGFEEHVYLSRPPTILRGSLV VKVLKPTKIKSISLTFKGIQRTDWPEGIPPKKNQYNEINEVITHTWPFLQGNINDKLP HNGADYFIEKDGTTHQGGINASFEDDMSSVRSSTPPPLGHSATSPSANLSPTRKSHYD EQSSNNATNFFTRNLSPSFIRRGKSSSISSMAEIGKASSFTDLMPSTSSPSPGDGHSN IIHFAPGDYIYNFEHPLPASIPESCNATFGSTSYYLEVNITRPGAFKTNLAGRLPINI IRTLAETSLEENESIVITRDWEDQLRYDIVIGAKSVVLDSYLPLAFRFVPLWGKVALH RIRVYLTENLEYYCSNKKVHRMEPAKKYLLLEHKAKKGRSLLSSKNPEDESSTDSLND FDDDILPKELEFQLFVPTELNARTNSRLHPDTSYENIQAHHWIKICLRISKQDPENPE KRKHYEISIDSPLHVLSHLCSHNNTLLPAYDDLIPGMSLVHNQSELPPLSPGVTPVEH TARPRNGSVGNQILGIFNNNGSNGNSQSRSSSVPPENENGRPSTPIEFHHISSGLESA GAVEREADMHLEANLYSPKENAITAINSPQALPHPDTFSSPVLSSPVQRPIHLIRKPS VNPPPFDADVPPPPATIPPPAYEERDSGSRRGSVGYGRGLSDNSSNSRSLSLSPLRID EPSENGNTTSTRPNVATNGFHSTAAASNTPVRDLLIQQLNGSGSSSLVTPTELVEPTT RIDDNIPIDSSIPQIEIHNENNVEIHGTDASTISNSSARRSSVNSERGGTINGHSEDR ASNHETETETEEEEEDIADYPSPILPPTAIHGMAKISRTSSAASATSAASVNSAEIPV EQTIPLLSLVPSHNSQANIDSYNKGRNESTGSLLYEVAKPTEFYNGLESSAGVDNDFF KVMSSSLSKLRNPRLAKHYQDQQS" misc_feature <805..1014 /locus_tag="CAALFM_C603180CA" /note="Arrestin (or S-antigen), N-terminal domain; Region: Arrestin_N; cl22903" /db_xref="CDD:451447" misc_feature 1063..1584 /locus_tag="CAALFM_C603180CA" /note="Arrestin (or S-antigen), C-terminal domain; Region: Arrestin_C; smart01017" /db_xref="CDD:214976" ORIGIN 1 atgaatatac ctaattcacc attattcgcg ccgcagcaac tttcaaatca taatagcaca 61 cctactaatt ccagtaatga caaaggaact accatcacat ctactcccac ttctaaaaac 121 catctaaata aatcttcatc ttcgtcatta gcggtgttaa ctccaacttt gcctgaaaaa 181 ccaactgtat caacttcatc attggcagta tacattgttc cgtcagaaca gaatctattt 241 gtgcaagggt ttgaagagca tgtatattta tccagaccac caactatatt acgaggatcc 301 ttagttgtga aagtgttaaa accaactaaa atcaaatcca taagtttgac atttaaagga 361 attcaaagaa cagattggcc cgaaggtata ccacccaaaa agaaccaata taacgaaata 421 aatgaagtta tcacccacac ttggccattt ttgcaaggaa atatcaacga caagttaccc 481 cacaatggcg ctgattattt cattgaaaaa gacggaacaa ctcaccaggg tggtattaat 541 gctagttttg aagatgacat gtcatctgtg aggtcaagta caccacctcc attggggcat 601 ctggcaacca gtccatcagc taatctttct cctacccgga aatcacacta tgacgaacaa 661 tcaagtaaca atgcaactaa tttcttcact cgtaatttat caccaagttt tattcgaaga 721 gggaaatcgt cttctatttc ttcaatggca gagataggga aagccagttc attcactgat 781 ttgatgccat ccacttcttc tcctagtcct ggtgacggtc attcaaacat tattcatttt 841 gcccctggcg attacattta caactttgaa catccattgc cagcatcgat ccctgagtca 901 tgcaatgcga cattcggaag cacatcatat tatttagaag tgaatattac tcgaccaggt 961 gctttcaaaa ccaatttagc tggcagatta ccaataaata taatcagaac ccttgctgaa 1021 acaagtttgg aagaaaacga atccattgtt attaccagag attgggaaga tcaacttcga 1081 tacgatatag tgataggagc caaatctgtt gtgttggatc tgtatttacc tttggcgttc 1141 aggtttgtgc cactttgggg gaaagtagct ttacacagaa tcagagtata cttgacagaa 1201 aacttggaat attattgttc taataagaaa gtacaccgga tggaacctgc caagaaatac 1261 ttgttgttag aacataaggc caaaaagggg agatcgttac tttcatctaa aaaccccgag 1321 gatgaatcat ccactgatag tttaaatgat ttcgatgatg atattttacc gaaagaacta 1381 gaatttcaat tattcgtacc cactgaatta aacgcaagaa ccaatagccg tcttcatcca 1441 gatacatcct atgaaaatat ccaagcccat cattggatta aaatttgttt acgtatcagt 1501 aaacaggatc cagagaatcc agaaaagagg aaacattacg aaatcagcat tgattccccg 1561 ttacatgtat tgagtcattt gtgttcacac aacaacacat tattaccagc ttacgatgac 1621 ctaattccgg ggatgtcatt ggttcacaac caaagtgaac tcccacctct ctcacctggg 1681 gtcacacctg ttgaacatac agcaagacct cgtaatggaa gtgttggcaa ccaaatcttg 1741 ggtattttca acaataatgg cagtaatgga aacagtcaat cgcgtagtag tagtgtgcca 1801 ccagaaaatg aaaacggtcg tccactgact ccaatagaat tccatcatat ttcttctggt 1861 cttgaaagcg ctggtgctgt tgaaagagag gccgatatgc atttagaagc taatttgtac 1921 ctgcccaaag aaaacgccat tactgctata aattcaccac aagcattacc acacccggac 1981 acgttctcat caccagtact tctgctgcca gtgcaacgac caattcattt aattcggaaa 2041 ccatcagtca acccacctcc ctttgatgca gatgtgccac caccacctgc cacgattcct 2101 ccaccagcat acgaagaacg agattcagga agtagacgtg gttctgttgg ttatgggaga 2161 gggttatctg ataatagtag taacagcaga tcattaagtt tatccccatt gagaatagac 2221 gaacctagtg agaacggaaa caccacttct actagaccta atgttgctac taatggcttc 2281 cactctaccg ctgcagctag taacactcct gttagagatt tattgattca acaattgaat 2341 ggttctggaa gctccagtct tgttacgcct actgaattgg ttgagcctac aactagaatc 2401 gacgacaata ttccaattga cagttctatc ccacagattg aaatacacaa tgaaaataac 2461 gtggagatcc atggcaccga cgcaagtacc atatccaatt cttctgcccg tcgatcaagt 2521 gttaatagtg aacgtggcgg cactattaat ggacacagcg aggacagggc actgaatcat 2581 gaaactgaaa ctgaaactga agaagaagaa gaagatattg cagattatcc ttcacccata 2641 ctaccaccta cagcaataca tggaatggca aagatatcgc gtacctcatc agccgcgtca 2701 gctacgtcag ctgcatcagt aaactctgca gagattcccg tggaacaaac tattccacta 2761 cttagtcttg ttccgtcgca caattctcaa gctaatatag attcttataa taagggtcgg 2821 aatgagtcaa cgggttcttt gttgtatgaa gttgctaagc ctaccgaatt ttataatggg 2881 ttagagtcta gtgctggtgt cgataacgat ttttttaagg taatgagcag tagtttaagt 2941 aaattacgga atcctcggct tgctaaacat tatcaagatc aacaaagttg a