Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_714034 1065 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_714034 VERSION XM_714034.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1065) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1065) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1065) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1065) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1065) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1065) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714034.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1065 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1065 /gene="HPD1" /locus_tag="CAALFM_C602890CA" /db_xref="GeneID:3639239" CDS 1..1065 /gene="HPD1" /locus_tag="CAALFM_C602890CA" /note="3-hydroxypropionate dehydrogenase; involved in degradation of toxic propionyl-CoA; rat catheter and Spider biofilm induced" /codon_start=1 /transl_table=12 /product="Hpd1p" /protein_id="XP_719127.2" /db_xref="CGD:CAL0000185703" /db_xref="GeneID:3639239" /translation="MLRTSIRAFSTQPRLSTNYGFIGLGLMGQHMARHVYNQLEPSDK LYVYDVDPKHTTQFLTEVTSQTPQNAPLLTPLNSLKDFTTEVDSQLDFIVTMVPEGKH VKSVVSELVGHYKSTGNYDPSIKTTFLDSSTIDIPTSRDVHQLVKSSIPEFDFIDTPV SGGVAGARKGTLSFMLSRETHDDIDPSLTALLSKMGINIFPCGATHGTGLAAKLANNY LLAITNIAAADSFQLAESFGLNLQNYAKLVAVSTGKSWASVDNCPIPGVYPDNNLPSD VNYEGGFITKLTRKDVVLATESAKFNNRFLMLGDIGRHWYDKACEREDIANRDLSVLF EWLGDLKQNEKGDVIDVKRK" misc_feature 46..1011 /gene="HPD1" /locus_tag="CAALFM_C602890CA" /note="3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]; Region: MmsB; COG2084" /db_xref="CDD:441687" ORIGIN 1 atgttaagaa cttcaattcg tgctttttct actcaaccaa gattatcaac caattacggg 61 tttattggtt tgggacttat gggccaacac atggcaagac acgtctataa tcaattagaa 121 ccaagtgata agttgtacgt ttacgatgtt gatccaaaac acacaactca atttttaaca 181 gaagtgactt cccaaacccc acaaaatgca cctttgctca ccccgttaaa ctcgttgaag 241 gattttacta ctgaagttga ttcacaatta gatttcattg ttaccatggt gcctgaaggt 301 aaacatgtga aatcagttgt gtccgaattg gttggtcatt ataaatcaac tggtaattat 361 gatccaagta tcaaaaccac tttcttggat tcttcaacaa tcgatatccc aacctcaaga 421 gacgtacacc aattggttaa gtcaagtatt cctgaatttg actttattga tactccagtg 481 tctggtggtg ttgcaggagc aagaaaggga acattgtcat ttatgttgtc cagagaaacc 541 catgatgata ttgatccaag tttaaccgca ttgttatcta aaatgggtat caacattttc 601 ccatgtggtg ctactcatgg tactggtttg gctgctaaat tggcaaacaa ttatttattg 661 gcaatcacaa acattgctgc tgctgattca ttccaattgg ctgaatcatt tggtttgaac 721 ttgcaaaact atgctaaatt ggttgctgtt tctacaggta aatcttgggc tagtgttgac 781 aattgtccaa ttccaggtgt ttatccagat aacaatttac caagtgatgt caactatgaa 841 ggtgggttca ttaccaaatt gactagaaag gatgttgttt tggctactga atctgctaaa 901 ttcaacaata gattcttgat gctcggtgac attggtagac attggtatga taaggcttgt 961 gaaagagaag atattgccaa tagagacttg tctgttcttt ttgaatggtt gggtgatttg 1021 aaacaaaatg aaaaaggtga tgtaattgat gtcaaaagaa aataa