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LOCUS XM_714013 2436 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_714013 VERSION XM_714013.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2436) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2436) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2436) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2436) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2436) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2436) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714013.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2436 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2436 /locus_tag="CAALFM_C602720CA" /db_xref="GeneID:3639212" CDS 1..2436 /locus_tag="CAALFM_C602720CA" /note="Has domain(s) with predicted zinc ion binding activity and role in intracellular protein transport, vesicle-mediated transport" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_719106.2" /db_xref="CGD:CAL0000193295" /db_xref="GeneID:3639212" /translation="MSSNGHKTKSIKSETNSSYTVHSLDQQQASICDNLQQAKFELEP VHLQFSLSNKLNKLLVSSNIMYILLTNVVYKIDLDNPSQVENYALPGKVTNAWLNPNG QTLIVQIEKQTYYTFEKKVFKSLKFKSIEVTSIAFSNHNMVVGTKDGIIYVYEKSLKQ VYKVDSPVQGVMFSNDYSQINVLANSLYTWDCFDTSYVELQKVFKQTAPVIKSINPPG IFTSNPQNYVYISSDNEIITNDEEMQLDRVDEEFSQIALTPHHLIGIEGNSLKIYNKL NKQLQELSLSENKIRGIAVDNLFNTYWVYTKNSIYEFVIENESISVWYDYYKMGKYSE ALKYLDEDDEANFSKRDLVLIKQGYDYLQRGGFGISSDDLSLQIQGIQILAKSTEPFE KVCLMLLNHKQSDALLIEYLLAKLNKKNKVRMIVLSAWIIELMVRNDDSRVYEFIKTN YKLLDRPTMYQILNSEKLIFYAELIEDYNFILKYYIDKKNWTLAVKTLIKLYTKGDIE LIYENATILLMNYPKVTETWLKLDLEYEKLLPALLKHQEQAIHFLQQVIMDKHYKKNK QLNNAYLCLLITKPGTDKQIIKFINFTSNFDTNFILRLCISHEKFHPAVLIYIEIGLF DQALELALKHDLIGLAEFILNKYDEDKQVEGIKLEDANYNVKRKLWLKFAKYLIDKSD DLNETLHHHINNVSMLDLKDLLPLFPETISINNFKDEIVESLNEYNKRIVHLSLDMNN SSEHLREMKKKVIYNKKKTNVAIIEPGEPCRKCGKLLVQENFVYFPNCHHAFHKECMK KNQCLLCNDFLNL" misc_feature <352..573 /locus_tag="CAALFM_C602720CA" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature <763..1089 /locus_tag="CAALFM_C602720CA" /note="Pep3/Vps18/deep orange family; Region: Pep3_Vps18; pfam05131" /db_xref="CDD:461557" misc_feature 1597..2052 /locus_tag="CAALFM_C602720CA" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 2302..2415 /locus_tag="CAALFM_C602720CA" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(2308..2310,2317..2319,2362..2364,2368..2370, 2377..2379,2386..2388,2404..2406,2413..2415) /locus_tag="CAALFM_C602720CA" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN 1 atgtcatcca atgggcataa aaccaaatct ataaagtcgg aaaccaattc gtcatataca 61 gttcattcat tagatcaaca acaggcgtca atatgtgata atctacaaca agcgaaattt 121 gaattagaac cagtacattt acagtttagt ttatcgaata aacttaacaa gctattggtg 181 tcaagcaata taatgtatat cctattaacc aatgttgttt ataagattga tttggataat 241 ccttcacagg tggagaatta tgcgttgcct ggtaaagtaa cgaatgcttg gttgaatcca 301 aatggtcaaa ctttgattgt gcagattgag aaacagacgt actatacatt tgaaaagaag 361 gtatttaaat cgttgaaatt caaaagtata gaagtcacat ctattgcatt ttctaatcac 421 aatatggtgg tggggacaaa agacgggata atctacgttt atgaaaaatc attaaaacag 481 gtctacaaag tcgattcccc agtacaagga gtaatgtttt ccaatgatta ttctcaaatc 541 aatgttttag caaacagttt atacacctgg gattgttttg atacttcata tgttgagttg 601 caaaaagtat ttaaacaaac agcacctgtt atcaaatcaa ttaacccacc tgggatattc 661 acgtcaaacc cacagaacta tgtgtatata tcatcagata atgaaataat aaccaacgac 721 gaggaaatgc aattggatcg agttgatgag gagtttctgc aaattgcact tacaccgcac 781 catcttattg gtattgaagg gaattcttta aagatatata acaaacttaa caagcaattg 841 caagagttga gcctttctga gaacaaaata cgaggaattg cggtggataa tttattcaac 901 acctattggg tgtacaccaa aaactctatc tacgagtttg ttattgaaaa cgagtcaatc 961 ctggtttggt atgattatta caaaatggga aaatattcag aggcattgaa atatttggat 1021 gaagatgatg aggcaaattt tctgaaacgt gatttagttt tgattaagca ggggtatgat 1081 tatttacaac gtggtggatt tggaatactg tcggatgact tgagtttaca gatacagggg 1141 attcagatat tggcaaaact gactgagcca tttgaaaaag tttgcttgat gttacttaac 1201 cataaacaat ctgatgcttt actcattgaa tatttgttgg ccaaattgaa taaaaagaat 1261 aaagtccgaa tgattgtgtt gtcagcttgg attattgaat tgatggtgag aaatgatgat 1321 tcgagagttt atgaattcat caaaaccaat tataagctac ttgatcgtcc tacaatgtat 1381 caaatattga attctgagaa gttgattttc tatgctgagt tgattgaaga ttataatttc 1441 attttaaagt attacattga taaaaagaat tggacattag cggttaaaac attaataaaa 1501 ctttacacta aaggagatat tgaattaatt tatgaaaatg ccactatttt gttaatgaac 1561 tacccaaaag tgactgaaac gtggttaaaa cttgatttgg aatatgagaa acttttaccg 1621 gcacttttga agcaccaaga gcaagcaatc catttcttac aacaagtcat tatggataaa 1681 cactacaaga aaaacaaaca gttaaacaat gcttatttgt gtttattaat tacaaaacca 1741 ggtactgata aacaaataat aaaattcatt aatttcacat ccaattttga taccaatttc 1801 attcttcggt tatgtatatc tcacgaaaaa tttcatcctg cggtattaat ttacattgaa 1861 attggcctat ttgatcaagc cttagaactt gccctcaaac atgatttgat tggtcttgct 1921 gaatttatat tgaacaagta cgacgaggac aaacaagtag agggaattaa acttgaagat 1981 gcaaattata atgtcaagag aaaactttgg ttaaaatttg ctaaatatct aatcgacaaa 2041 ctggatgact tgaatgaaac attacatcat cacatcaaca atgtttcaat gcttgatttg 2101 aaagaccttt tgccattatt tccggaaacg atactgatta ataattttaa agacgagata 2161 gttgaatcac taaatgagta caataaacga attgttcatt tgtcgttaga tatgaataac 2221 tcgtctgagc atttgcggga aatgaagaaa aaagtgattt ataacaaaaa gaaaacaaat 2281 gtggccataa tagaaccagg tgaaccgtgt cgcaaatgtg gcaaattgtt agtacaagag 2341 aactttgttt attttccaaa ttgccatcat gcgttccata aggagtgtat gaaaaagaac 2401 caatgtttat tatgtaatga ttttttgaat ttatag