Candida albicans SC5314 RNA exonuclease (CAALFM_C602580WA), partial

LOCUS       XM_713999               1494 bp    mRNA    linear   PLN 18-APR-2022
            mRNA.
ACCESSION   XM_713999
VERSION     XM_713999.2
DBLINK      BioProject: PRJNA14005
            BioSample: SAMN02953594
KEYWORDS    RefSeq.
SOURCE      Candida albicans SC5314
  ORGANISM  Candida albicans SC5314
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade;
            Candida.
REFERENCE   1  (bases 1 to 1494)
  AUTHORS   Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G.
  TITLE     Assembly of a phased diploid Candida albicans genome facilitates
            allele-specific measurements and provides a simple model for repeat
            and indel structure
  JOURNAL   Genome Biol. 14 (9), R97 (2013)
   PUBMED   24025428
REFERENCE   2  (bases 1 to 1494)
  AUTHORS   van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D.,
            Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B.,
            Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T.
  TITLE     Assembly of the Candida albicans genome into sixteen supercontigs
            aligned on the eight chromosomes
  JOURNAL   Genome Biol. 8 (4), R52 (2007)
   PUBMED   17419877
REFERENCE   3  (bases 1 to 1494)
  AUTHORS   Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S.,
            Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T.,
            Davis,R.W. and Scherer,S.
  TITLE     The diploid genome sequence of Candida albicans
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004)
   PUBMED   15123810
REFERENCE   4  (bases 1 to 1494)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1494)
  AUTHORS   Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2016) Department of Genetics, Candida Genome
            Database, Stanford University, Mail Stop-5120, Stanford, CA 94305,
            USA
REFERENCE   6  (bases 1 to 1494)
  CONSRTM   Candida Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2016) Department of Genetics, Candida Genome
            Database, Stanford University, Mail Stop-5120, Stanford, CA 94305,
            USA
  REMARK    Sequence and annotation update by submitter
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_032094).
            
            On Dec 8, 2016 this sequence version replaced XM_713999.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: CGD
            Annotation Status   :: Full annotation
            Annotation Version  :: A22-s07-m01-r01
            URL                 :: http://www.candidagenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1494
                     /organism="Candida albicans SC5314"
                     /mol_type="mRNA"
                     /strain="SC5314"
                     /host="Homo sapiens"
                     /culture_collection="ATCC:MYA-2876"
                     /db_xref="taxon:237561"
                     /chromosome="6"
                     /haplotype="A"
                     /geo_loc_name="USA: New York"
                     /collected_by="Margarita Silva-Hutner"
     gene            <1..>1494
                     /locus_tag="CAALFM_C602580WA"
                     /db_xref="GeneID:3639207"
     CDS             1..1494
                     /locus_tag="CAALFM_C602580WA"
                     /note="Protein with a predicted role in 5.8S rRNA
                     processing; flow model biofilm induced"
                     /codon_start=1
                     /transl_table=12
                     /product="RNA exonuclease"
                     /protein_id="XP_719092.2"
                     /db_xref="CGD:CAL0000199590"
                     /db_xref="GeneID:3639207"
                     /translation="MSPTSNERNNKSNLSNGAGDIANTSKPVTKKPMDPKLLTEEYIL
                     EQRRLRELRKEKIRQQKEALGLIPPPEKEKFLKRSMLEVCKHKPGLPSIKIMSYNILA
                     QTLIRREIYPTNGKILKWSVRSQILLDELKHYNADIMCLQEVDKVQYEGFWVSQLEKL
                     GYSTRFYRNNTKNHGCVIVFRDKLFTCKHQSFIRLDQDLNQEASEKSLPPARIATTNI
                     AFMAYLEFTSTFIKEYPCLEETNGFIIGTTHLFWHPFGTYERARQTYMLLYKFREFQR
                     VLRIIVGNSKRFYSFFTGDFNSEPFDAPYRAITAKPIKFSGRSRNVLGCSLAYTYSKD
                     RSLDEDDIDTEELEQERDNNPSDPEPETFETTPEQDKLINDLEEAHNDLDVRAISLYS
                     VGYKQAHPENANTAGHRNEPAFSNWVDKWNGMLDYIFLLVPWNKSDDRSKRIDMPEDL
                     AEQYKIKLTKLLRLPTPEEMGSPPSGQPRMHQYPSDHLSIMAEVQLE"
     misc_feature    205..1488
                     /locus_tag="CAALFM_C602580WA"
                     /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
                     superfamily; Region: EEP; cl00490"
                     /db_xref="CDD:469791"
     misc_feature    order(295..297,427..429,745..747,883..885,889..891,
                     1276..1278,1456..1461)
                     /locus_tag="CAALFM_C602580WA"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197306"
     misc_feature    order(427..429,1456..1458)
                     /locus_tag="CAALFM_C602580WA"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:197306"
     misc_feature    order(745..747,889..891,1459..1461)
                     /locus_tag="CAALFM_C602580WA"
                     /note="putative phosphate binding site [ion binding];
                     other site"
                     /db_xref="CDD:197306"
ORIGIN      
        1 atgctgccga caagtaatga aagaaacaat aaaagtaatt tgtctaatgg ggctggtgat
       61 atagctaata cttcgaaacc ggtaacaaaa aaacccatgg acccaaaatt acttacagag
      121 gagtatatcc ttgaacaaag acgtctcagg gaactacgta aggaaaagat acgtcaacag
      181 aaggaagcat taggtttgat acctcctcca gagaaggaga agtttttgaa acgatcaatg
      241 ctagaagtct gcaaacacaa acctgggctt ccgtccatca agatcatgag ctacaatatc
      301 ttagcacaga cattgatccg aagagaaata taccctacaa atgggaaaat attgaaatgg
      361 tctgtgaggt ctcaaatact attagacgaa ttgaaacact ataatgccga tatcatgtgt
      421 ttgcaagaag tggataaagt acagtatgaa gggttctggg ttagtcagct tgaaaaattg
      481 ggatattcta ctagatttta tcgtaacaat accaaaaatc atggctgtgt catagttttc
      541 agagacaagc tatttacttg taaacatcag tcgttcataa gattagacca agatttgaat
      601 caagaagcca gtgagaagct gttaccacca gcacgaattg caactacaaa cattgcgttc
      661 atggcatatt tggagttcac atcaacattt atcaaagaat acccatgttt agaagaaacc
      721 aatggattta tcattggtac gactcattta ttttggcatc cttttggaac ttacgaacga
      781 gccagacaaa catatatgct tttgtataaa ttcagagagt ttcagcgtgt attgagaatt
      841 atagtaggaa attctaaaag attttactcg ttctttactg gtgatttcaa ttctgaacca
      901 tttgatgcac cgtatcgtgc tattactgca aaaccaatca agttttctgg tcggtccagg
      961 aatgttttag ggtgttcgtt ggcatacacg tactcaaagg atagaagttt ggatgaagac
     1021 gatatagaca ccgaagagtt agagcaagaa agagacaaca accctctgga cccagaacca
     1081 gaaacatttg aaacaacacc ggaacaagac aaactcataa atgatttaga agaggcacac
     1141 aatgatttag atgtgagagc catttcatta tattcggttg gatacaaaca agctcatccc
     1201 gaaaatgcaa atacagctgg acatagaaac gagcctgcct tttccaactg ggtcgacaaa
     1261 tggaacggaa tgttagatta cattttctta ttggttccat ggaacaaatc tgatgatcgc
     1321 tcaaagagga tagatatgcc agaagattta gctgaacaat ataaaatcaa actaacaaag
     1381 ctacttagat tgcctacacc agaagaaatg gggtcaccac cgtcaggtca acctcgcatg
     1441 catcagtacc cctcagatca tcttagtatt atggctgaag tacaacttga ataa