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LOCUS XM_713003 1179 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_713003 VERSION XM_713003.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1179) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1179) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1179) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1179) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1179) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1179) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1179 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1179 /gene="IHD1" /locus_tag="CAALFM_C603850CA" /db_xref="GeneID:3640291" CDS 1..1179 /gene="IHD1" /locus_tag="CAALFM_C603850CA" /note="GPI-anchored protein; alkaline, hypha-induced; regulated by Nrg1, Rfg1, Tup1 and Tsa1, Tsa1B in minimal media at 37; oralpharyngeal candidasis induced; Spider biofilm induced; regulated in Spider biofilms by Tec1, Efg1, Ndt80, Rob1, Brg1" /codon_start=1 /transl_table=12 /product="Ihd1p" /protein_id="XP_718096.1" /db_xref="CGD:CAL0000194292" /db_xref="GeneID:3640291" /translation="MRPTPLFFALLQIALAAKRADQICNDHCSNAYQKQQSCGGTDDV SSQSATLKCLCADESYWSELASCDCSSYDSNVSAQDLRAYYCNVGVTGGSQGQSTSGD ANAATNSNDATGTATDAAAATNGNDGASGTADANNANNTDGSGATDASNTNNNGSTDT VNTNTAGSGSSETTAAAGAAAGTAAGTNSASDQANETGSDATNAATGSDASGTAATNT ASTASGATSGSGSDAAKKTGTNTDSDSDTATKGSDATAGSMTTAASGLGATNGTSNST GSHSGSMTSITTGSGFTNGTSSRSGSGSGSSTRSGSNSDSSSSGSGSRSSSSADSSDS DSGSGSSSTESGSGSGSGSSTSSGSGSGSGSSTRSGGFAATIPTVTFGSLVALALNLL " misc_feature <259..>873 /gene="IHD1" /locus_tag="CAALFM_C603850CA" /note="Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport]; Region: FhaB; COG3210" /db_xref="CDD:442443" ORIGIN 1 atgagaccaa ctccattatt ctttgcactt ttacaaattg ctcttgccgc aaaaagagct 61 gaccaaattt gtaacgacca ctgttctaac gcataccaaa agcaacaatc ttgtggtggt 121 acagatgatg ttagttccca atctgctact ttgaaatgtt tgtgtgctga tgaaagttat 181 tggtctgaat tggctctgtg tgattgttcc agctatgatt ccaatgtttc tgctcaagac 241 ctccgtgctt actactgtaa cgttggtgta actggtggct ctcaaggtca atctacaagt 301 ggagatgcta atgctgccac taattctaat gatgctactg gtactgccac tgatgctgcc 361 gccgctacta atggtaacga tggtgctagt ggaactgccg atgcaaacaa tgccaataat 421 actgatggta gtggtgctac agatgcttct aataccaaca acaatggctc cactgatact 481 gttaacacta atactgctgg ttctggatct agtgaaacta ctgctgctgc tggtgccgct 541 gctggtaccg ctgctggtac aaactctgca tctgatcaag caaatgaaac tggttctgac 601 gctactaatg ctgccacagg ctctgatgcc tcaggtactg ctgccaccaa taccgcatcc 661 actgcctctg gagccacttc tggctctggt tctgacgctg ctaagaagac aggtactaat 721 actgattcag actcagatac tgctactaaa ggttcagacg ctactgctgg tagtatgaca 781 actgctgctt caggtttagg tgctactaat ggaacaagca acagtactgg ttctcattct 841 ggtagtatga ccagtattac aacaggttca ggatttacta atggaaccag cagcagatca 901 ggctcgggtt caggctcttc tactagaagt ggaagcaact ctgattcatc aagctcaggt 961 tcaggttcca gatcttcctc atctgctgat agttctgact cagattcagg ttccggctca 1021 tcttcaactg aatcaggatc tggttcaggt tccggctctt caacttcatc tggatctggt 1081 tcaggttctg gttccagtac aagatctggt ggttttgctg ctactattcc aactgtgact 1141 tttggttctt tagttgcttt ggcattgaac ttattataa