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LOCUS XM_712995 1914 bp mRNA linear PLN 18-APR-2022 (CAALFM_C603780CA), partial mRNA. ACCESSION XM_712995 VERSION XM_712995.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1914) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1914) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1914) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1914) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1914) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1914) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_712995.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1914 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1914 /locus_tag="CAALFM_C603780CA" /db_xref="GeneID:3640308" CDS 1..1914 /locus_tag="CAALFM_C603780CA" /note="Ortholog(s) have ubiquitin-protein transferase activity, role in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and SCF ubiquitin ligase complex localization" /codon_start=1 /transl_table=12 /product="SCF ubiquitin ligase complex subunit" /protein_id="XP_718088.2" /db_xref="CGD:CAL0000181096" /db_xref="GeneID:3640308" /translation="MTLSIYDLGEDILTSQISNYLSPEDIFKFFSLSKTLYSIYQNSS IIYQYLYNKKFTNNENNYTLSLQENLNWKQLFYLRCNRHQKVYTWGQSSMGRLGYNLS QVPIENRSENFGWMMVHTPTNINNFNDHIIVDIVATGFSFIILANDGELFFTGNDWKQ SHNRATPGPIKTQDYRPTPGTMALYTLTNNQTLEPIRSRRNIVRGVPPMPMMNRRYAN DDSDDSSGENSDGEIITPDATTTTESTSSSVPPLVPAPTSSALPQGRRKITQPEPTPT STPALTYRPSKIKESNFISRLFLPPLPPNMKDNLEKRKIISISAGREHIIALDNYNNI YTWDTGCQSNVGVMLEFPGISSNSSNFGRVMKISAGWNLSAALIDNYGLIVWYTRIGI TEEQFHNREFISQAKYFIIPFTKNDVIDFTVGSNFVMFIRKSDEKLYQTRFNVHEIAT RDDTSNITIDEIKQFTNPMDNFNHWKQQQSENNKENIRFTKVTGCFNDFSVFTNHDQV LLGNLHHLEYHDNGNDQGMKPIIIDELQGKNIKRIEIGDYHYLALTADGTLLSWGTES RFCGCLGLGSKQSILDQYTTTTNTEDNDEVKLRGNNLVVLKPLPVKPPSYKGKWVCIA ASGWHSDGIYVPT" misc_feature <1615..>1890 /locus_tag="CAALFM_C603780CA" /note="Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]; Region: ATS1; COG5184" /db_xref="CDD:444065" misc_feature 1618..>1689 /locus_tag="CAALFM_C603780CA" /note="Regulator of chromosome condensation (RCC1) repeat; Region: RCC1_2; pfam13540" /db_xref="CDD:463914" ORIGIN 1 atgacattat ctatatatga tttaggagaa gatattttaa catctcaaat atccaattat 61 ctatcgccag aagatatttt caaatttttc agtctttcca aaacattata ttcaatctat 121 caaaattcat caataattta tcaatattta tataataaaa aattcactaa taatgaaaac 181 aattatactt tatcccttca agaaaatctt aattggaaac aattatttta tttacgttgt 241 aatcgccatc aaaaagttta tacatgggga caatctctga tggggagatt aggatataat 301 ttatcccaag tacctataga gaatcgatcc gagaattttg gatggatgat ggttcataca 361 cctactaata ttaataattt taatgatcat ataattgttg atattgttgc tacgggtttc 421 agttttataa ttcttgctaa tgatggagaa ttatttttta cagggaatga ttggaaacaa 481 agtcataata gagctactcc aggaccaatt aaaactcaag attatcgtcc aactccaggg 541 acaatggcat tatatacatt gacaaataat caaactcttg aaccaattag atcacgaaga 601 aatatcgtta gaggagttcc accaatgccc atgatgaata gacgatatgc caatgatgat 661 agcgatgata gtagtggtga gaacagtgat ggtgaaataa tcacaccaga tgctacgacc 721 acaactgaat caactagtag ttcagtacca ccgttggtac ctgctccaac tagttctgct 781 ttacctcaag gaagaaggaa aattactcaa ccagaaccaa caccaacatc aacaccagca 841 ttgacttatc gtccttctaa aatcaaagaa tcaaacttta tatcaagatt atttttacct 901 ccacttcctc ctaatatgaa agacaattta gaaaaacgaa aaattatatc tattagcgct 961 ggtagagaac atattattgc tttagataat tataataaca tttatacatg ggacactgga 1021 tgtcaatcaa atgttggagt tatgcttgaa ttccccggta tttcttctaa ttcttctaat 1081 tttggtcgag taatgaaaat atctgctggt tggaatttat cagcagcatt aattgataat 1141 tatggattaa ttgtatggta taccagaata ggtataactg aagaacaatt tcataatcga 1201 gaatttattt ctcaagctaa atattttatt attccattta cgaaaaatga tgttattgat 1261 ttcactgtag ggtcaaattt tgtcatgttt attagaaaat ccgatgaaaa attatatcaa 1321 acaagattca atgttcatga aattgccaca agagatgata catcaaatat aaccattgat 1381 gaaattaaac aatttactaa tccaatggat aattttaatc attggaaaca gcaacaatca 1441 gaaaataata aagaaaatat taggtttact aaagttactg gttgttttaa tgatttttcc 1501 gttttcacta atcatgatca agtattatta ggtaatcttc atcatttgga atatcacgat 1561 aatgggaatg atcaaggaat gaaaccaatc attattgatg aattacaagg taaaaatatt 1621 aaaagaatag aaattggtga ttatcattat ttagcattaa ctgctgatgg gacattattg 1681 agttggggca cagaatcaag attttgtgga tgtttgggct taggaagtaa acaaagtatt 1741 cttgatcagt atactactac tactaatacc gaggataatg atgaagttaa gttaagaggg 1801 aataatttgg tagtgcttaa accattacct gtgaaacccc catcatacaa agggaaatgg 1861 gtatgtattg cagccagtgg ttggcattct gatggtatat atgtgcctac atag