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LOCUS XM_712989 2910 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_712989 VERSION XM_712989.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2910) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2910) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2910) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2910) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2910) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2910) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_712989.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2910 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2910 /gene="ALA1" /locus_tag="CAALFM_C603720WA" /db_xref="GeneID:3640285" CDS 1..2910 /gene="ALA1" /locus_tag="CAALFM_C603720WA" /note="Alanyl-tRNA synthetase; translational regulation generates cytoplasmic and mitochondrial forms; Gcn4p-regulated; repressed by amino acid starvation (3-AT); translation-related genes downregulated upon phagocytosis by murine macrophages" /codon_start=1 /transl_table=12 /product="alanine--tRNA ligase" /protein_id="XP_718082.1" /db_xref="CGD:CAL0000182169" /db_xref="GeneID:3640285" /translation="MIKTLLRRMSSNTTIPTPNGSNHWTASKVRSTFLDYFKKQQHTY VPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASLKRAANSQKCIRAGGKHN DLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVYGLQEDRLYVTYFGGD EKQGLEPDLEAKNFWLKVGVPEDHILPGSVEDNFWEMGDQGPCGPCSEIHYDRIGGRN ASALVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMGFERLVSILQNKYSN YDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVRTLTFAICDGGVP NNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFPEISSGAQDLK EILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGFPVDLTRLM AEEAGLKIDEEGFERAKEESREASKGSGTKDGKTLVKLDVHALSELDQNDAIPKTNDE FKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILLDKTPFYAEQGGQEYDTGKLVID GKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATYDELRRWPIRNNHTGTHILNF ALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEKIEAISNKYIKNNDKVYYKD VSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTNTKWHEISIEFCGGTHV AKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQEIDNASSLPFGVAK ESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKEETKKTLDVVNNWL NDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETDKVAHGCYVSDE AIAKGINANELAKAVSENIGGKAGGKGNIVQGMGDKPQGINTAIEEVTKLFKEKL" misc_feature 46..2889 /gene="ALA1" /locus_tag="CAALFM_C603720WA" /note="alanyl-tRNA synthetase; Region: PLN02900" /db_xref="CDD:215487" ORIGIN 1 atgataaaga cattgctccg aagaatgtca agtaatacca ctataccaac cccaaatggc 61 tccaatcatt ggactgcctc aaaagttaga tctacatttt tagactattt caagaaacag 121 caacacactt atgtcccatc ttcatcagtt gttcctcaca atgacccaac tttattgttt 181 gccaatgctg gtatgaatca atataaacca atttttttgg gaacagttga tccagctagt 241 gattttgcta gtttaaaaag agctgccaat tctcaaaaat gtattagagc tggtggtaaa 301 cataacgatt tagaagatgt tggtagagac tcttatcatc atacattttt tgaaatgctt 361 ggtaattggt catttggaga ttatttcaaa aaagaggcca ttgactattc atgggaattg 421 ttgaccaaag tttatggatt acaagaagat agattgtatg tcacttattt tggtggtgat 481 gaaaaacaag gattagaacc agatttagaa gccaaaaatt tttggttaaa ggttggtgta 541 ccagaggatc atattttacc aggttcagtt gaagataatt tttgggaaat gggtgatcaa 601 ggtccatgtg gtccatgtag tgaaatccat tatgatagaa ttgggggtag aaatgcttct 661 gctttagtca atatggatga ccctaatgtg cttgaagttt ggaatgttgt tttcattcaa 721 tataatcgtg aagctgatgg gaacttgcgt acattaccaa acaaacacat tgatactggt 781 atgggttttg aaagattggt gtcaatttta caaaacaaat attcaaatta tgatactgat 841 gtgtttttac caattttcga caaaattaga gaaattactg gtgttagacc atatacagga 901 aagtttggta atgaagataa agatggtata gatactgctt atagagttat tgcagatcat 961 gttagaactt tgacatttgc tatttgtgat ggtggtgttc ctaacaatga aggtagaggt 1021 tatgttttga gaagaatttt gagaagaggt tctcgttatg ttcgtaaata tatgaattat 1081 ccaattggag gatttttcca acaattggtc gatgttgtta ttgaacaaaa caaggaaatt 1141 ttcccagaaa tttctagtgg tgcccaagat ttgaaggaaa ttttgaatga agaagaatta 1201 tcatttgcca aaacattaga tcgtggtgaa aaattatttg aacaatatgc tattattgct 1261 tccaagactc cagaacaaac tttatctggt aaagatgttt ggagattata tgacacttat 1321 gggttcccag ttgatttaac cagattaatg gctgaagaag ctggtttgaa aattgacgaa 1381 gaaggttttg aacgcgctaa agaggaatct agagaagctt ccaagggaag tggtactaaa 1441 gatggtaaaa ctttggtgaa attagatgtt catgctcttt ctgaattaga tcaaaatgat 1501 gctattccta aaaccaatga cgaatttaaa tatggtcttg aaaatgtcaa ggctaaagtt 1561 gttggtattt atgatggttc caagtttgtt gattctattg aagatccaag tattcaatat 1621 ggcatattgt tggataaaac cccattctat gctgaacaag gtggtcaaga atatgatact 1681 ggtaaattag ttattgatgg taaactggaa ttcaatgttg ctaacgttca agtttatgct 1741 ggctacgtgt tacacactgg taatattgtt gatgggaagt taaatgttgg tgatgaaatc 1801 attgctactt atgatgaatt aagaagatgg ccaattagaa ataaccacac tggtactcat 1861 attttgaatt ttgccttgag agaagtcctt ggagatggcg ttgatcaaaa aggttcatta 1921 gttgctccag aaaaattgag atttgatttc agtcataaac aagctgttac cgctaaagaa 1981 ttggaaaaaa ttgaagctat ttctaacaaa tacattaaaa acaatgataa agtttattat 2041 aaagatgttt cattgaccaa agccaaagaa atcaatgggt taagagctgt ttttggagaa 2101 acttatcctg atccagttag agttgtttct attggtgtac tggttgatga tttattagct 2161 gatcctacta ataccaaatg gcacgaaata tctatagaat tttgtggtgg tactcatgtt 2221 gccaagactg gtgatattaa agatttagtg attattgaag aatcaggtat tgctaaaggt 2281 attagaagaa ttgttgctgt tactggacat gatgctcatc atgttcaaaa agttgctaat 2341 gaatttgaac aagaaatcga caatgcttca agtttaccat ttggtgttgc taaagaatct 2401 aaatctaaag aattgggagt tgcattgaaa aaattatcaa tttccgtgtt ggataaacag 2461 agattgactg aaaaattcaa taaattggat aaatccatca aagataattt gaaggctaaa 2521 caaaaagaag aaaccaaaaa aactttagat gtggttaata attggttgaa tgataaagaa 2581 aatgcttcat catttttggt tgctcacgtt ccaattactg ctaatgccaa ggcaatcact 2641 gaagccatta atttgattaa aaagcaagat aaaaccaaat caatttattt attgactggt 2701 gaaaccgata aagttgctca tggatgttat gttagtgatg aagccattgc caagggtatt 2761 aatgctaatg agttggctaa agctgtatca gaaaatatag gtggtaaagc tggtggtaaa 2821 ggtaacattg ttcaaggtat gggtgataaa ccacaaggta ttaacactgc tattgaagaa 2881 gtaactaaat tattcaaaga gaaattgtag