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LOCUS XM_712984 3783 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_712984 VERSION XM_712984.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 3783) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 3783) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 3783) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 3783) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 3783) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 3783) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_712984.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3783 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>3783 /gene="ALS1" /locus_tag="CAALFM_C603700WA" /db_xref="GeneID:3640280" CDS 1..3783 /gene="ALS1" /locus_tag="CAALFM_C603700WA" /note="Cell-surface adhesin; adhesion, virulence, immunoprotective roles; band at hyphal base; Rfg1, Ssk1, Spider biofilm induced; flow model biofilm repressed; CAI-4 strain background effects; promoter bound Bcr1, Tec1, Efg1, Ndt80, and Brg1" /codon_start=1 /transl_table=12 /product="Als1p" /protein_id="XP_718077.1" /db_xref="CGD:CAL0000199010" /db_xref="GeneID:3640280" /translation="MLQQFTLLFLYLSIASAKTITGVFDSFNSLTWSNAANYAFKGPG YPTWNAVLGWSLDGTSANPGDTFTLNMPCVFKYTTSQTSVDLTADGVKYATCQFYSGE EFTTFSTLTCTVNDALKSSIKAFGTVTLPIAFNVGGTGSSTDLEDSKCFTAGTNTVTF NDGDKDISIDVEFEKSTVDPSGYLYASRVMPSLNKVTTLFVAPQCENGYTSGTMGFSS SNGDVAIDCSNIHIGITKGLNDWNYPVSSESFSYTKTCTSNGIQIKYQNVPAGYRPFI DAYISATDVNQYTLAYTNDYTCAGSRSQSKPFTLRWTGYKNSDAGSNGIVIVATTRTV TDSTTAVTTLPFNPSVDKTKTIEILQPIPTTTITTSYVGVTTSYSTKTAPIGETATVI VDVPYHTTTTVTSEWTGTITTTTTRTNPTDSIDTVVVQVPSPNPTVSTTEYWSQSYAT TTTVTAPPGGTDTVIIREPPNHTVTTTEYWSQSFATTTTVTAPPGETDTVIIREPPNH TVTTTEYWSQSYATTTTVTAPPGGTDTVLIREPPNHTVTTTEYWSQSYATTTTVTAPP GGTDTVIIREPPNYTVTTTEYWSQSYATTTTITAPPGETDTVIIREPPNHTVTTTEYW SQSYATTTTVTAPPGGTDTVLIREPPNHTVTTTEYWSQSYATTTTVTAPPGGTDTVLI REPPNHTVTTTEYWSQSYATTTTVTAPPGGTDTVIIREPPNHTVTTTEYWSQSYATTT TVTAPPGGTDTVIIREPPNYTVTTTEYWSQSFATTTTVTAPPGGTDTVIIYESMSSSK ISTSSNDITSIIPSFSRPHYVNSTTSDLSTFESSSMNTPTSISSDGMLLSSTTLVTES ETTTESICSDGKECSRLSSSSGIVTNPDSNESSIVTSTVPTASTMSDSLSSTDGISAT SSDNVSKSGVSVTTETSVTTIQTTPNPLSSSVTSLTQLSSIPSVSESESKVTFTSNGD NQSGTHDSQSTSTEIEIVTTSSTKVLPPVVSSNTDLTSEPTNTREQPTTLSTTSNSIT EDITTSQPTGDNGDNTSSTNPVPTVATSTLASASEEDNKSGSHESASTSLKPSMGENS GLTTSTEIEATTTSPTEAPSPAVSSGTDVTTEPTDTREQPTTLSTTSKTNSESVATTQ ATNENGGKSPSTDLTSSLTTGTSASTSANSELVTSGSVTGGAVASASNDQSHSTSVTN SNSIVSNTPQTTLSQQVTSSSPSTNTFIASTYDGSGSIIQHSTWLYGLITLLSLFI" misc_feature 169..894 /gene="ALS1" /locus_tag="CAALFM_C603700WA" /note="Cell-wall agglutinin N-terminal ligand-sugar binding; Region: Candida_ALS_N; pfam11766" /db_xref="CDD:403080" misc_feature <2689..>3708 /gene="ALS1" /locus_tag="CAALFM_C603700WA" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" ORIGIN 1 atgcttcaac aatttacatt gttattccta tatttgtcaa ttgcaagtgc aaagacaatc 61 actggtgttt ttgatagttt taattcatta acttggtcca atgctgctaa ttatgctttc 121 aaagggccag gatacccaac ttggaatgct gttttgggtt ggtccttaga tggtaccagt 181 gccaatccag gggatacatt cacattgaat atgccatgtg tgtttaaata tactacttca 241 caaacatctg ttgatttaac tgccgatggt gttaaatatg ctacttgtca attttattct 301 ggtgaagaat tcacaacttt ttctacatta acatgtactg tgaacgacgc tttgaaatca 361 tccattaagg catttggtac agttacttta ccaattgcat tcaatgttgg tggaacaggt 421 tcatcaactg atttggaaga ttctaaatgt tttactgctg gtaccaatac agtcacattt 481 aatgatggtg ataaagatat ctcaattgat gttgagtttg aaaagtcaac cgttgatcca 541 agtggatatt tgtatgcttc cagagttatg ccaagtctca ataaggtcac aactcttttt 601 gtggcaccac aatgtgaaaa tggttacaca tctggtacaa tggggttctc cagtagtaac 661 ggtgacgttg ctattgattg ctcaaatatt catattggta tcacaaaagg attaaatgat 721 tggaattatc cggtttcatc tgaatcattt agttacacta aaacttgtac atctaatgga 781 attcagatta aatatcaaaa tgtacctgct ggttatcgtc catttattga tgcttatatt 841 tctgctacag atgttaacca atatacttta gcatatacca atgattatac ttgtgctggc 901 agtcgtctgc aaagtaaacc tttcacttta agatggactg gatacaagaa tagtgatgcc 961 ggatctaacg gtattgtcat tgttgctaca actagaacag ttacagacag taccactgct 1021 gtcactactt taccattcaa tccaagtgtt gataaaacca aaacaatcga aattttgcaa 1081 cctattccaa ccactaccat cacaacttca tatgttggtg tgactacttc ctatctgact 1141 aagactgcac caattggtga aacagctact gttattgttg atgtgccata tcatactacc 1201 acaactgtta ccagtgaatg gacaggaaca atcactacca ctacaactcg taccaatcca 1261 actgattcaa ttgacacagt ggtggtacaa gttccactgc caaatccaac tgttagtact 1321 actgaatatt ggtctcagtc ctatgctaca accactacag ttactgctcc tccaggtggt 1381 accgatactg ttatcattag agaaccacca aaccacactg tcactactac tgaatattgg 1441 tcacagtcct ttgccaccac taccactgta actgcaccac caggtgaaac tgataccgtt 1501 atcattagag aaccaccaaa tcacactgtt actactactg aatactggtc acaatcctat 1561 gccaccacta ccactgttac tgctcctcca ggtggtaccg ataccgttct tatcagagag 1621 ccaccaaacc atactgttac tactactgaa tactggtcac aatcctatgc caccactacc 1681 actgtaactg caccaccagg tggtactgac actgttatca ttagagagcc accaaactac 1741 acggttacta ctactgaata ttggtctcaa tcatatgcaa ccactactac cattaccgct 1801 ccacctggtg aaaccgatac cgttatcatt agagaaccac caaatcacac tgttactact 1861 actgaatact ggtcacaatc ctatgccacc actaccactg ttactgctcc tccaggtggt 1921 accgatactg ttcttatcag agagccacca aaccacactg tcactactac tgaatactgg 1981 tctcaatcat atgctacaac caccactgtt actgcaccac caggtggtac cgataccgtt 2041 cttatcagag agccaccaaa ccacactgtc actactactg aatactggtc acaatcctat 2101 gccaccacta ccactgtaac tgcaccacca ggaggtaccg atactgttat cattagagaa 2161 ccaccaaacc acactgtcac tactactgaa tactggtcac aatcctatgc caccactacc 2221 actgttactg ctcctccagg tggtactgac actgttatca ttagagaacc accaaactac 2281 acggttacta ctactgaata ttggtcacaa tcatttgcca caaccaccac agttactgct 2341 cctccaggtg gtactgacac tgtgattatc tatgaaagca tgtcaagttc aaagatttct 2401 acatcctcca atgatataac cagtatcatt ccatcatttt cccgtcctca ttatgtcaac 2461 agcacaacct ccgatttgtc aacatttgaa tcttcatcca tgaatactcc tacttctatc 2521 agtagtgatg gtatgttgtt gtcttctaca actttggtta ctgaatcaga aacaactaca 2581 gaactgattt gcagtgatgg taaagagtgt tctagattgt ccagttcttc tggtattgtc 2641 acaaatccag atagcaatga atcctcaatc gtaactagta ctgttcctac tgcaagtaca 2701 atgtctgatt cactttcttc aactgatggt attagtgcta catcttctga taatgtttca 2761 aaatcaggag tatcagttac aaccgaaact tctgttacta ctattcaaac tactccaaac 2821 ccattatcat cttcagtgac atcattgact cagttgtctt caattccaag tgtttcagaa 2881 agtgaaagta aagttacatt tacaagcaat ggagacaacc aaagtggtac tcatgattca 2941 caatctactt ccactgaaat tgaaattgta acaaccagtt ctactaaagt tttaccacct 3001 gtcgtttctt ctaatactga tttgactagt gaaccaacaa ataccagaga acaaccaact 3061 acattatcaa ctacttcaaa ctccatcact gaagatatca ccacatctca acctacaggt 3121 gataatggag acaatacttc atcaaccaat ccagttccaa ctgtggcaac aagtacttta 3181 gcatctgcaa gtgaagaaga caacaaaagc ggttctcatg aatcagcatc cacaagtttg 3241 aaaccaagta tgggtgaaaa ttctggatta actacttcta ctgaaattga agctacaaca 3301 accagtccta cagaagctcc atcacctgct gtttcttctg gtactgatgt aactactgaa 3361 ccaacagata ctagagaaca acctactaca ttatcaacta cttcaaaaac aaacagtgaa 3421 ctggttgcta ctacacaagc tactaatgaa aatggtggta aatctccatc aactgattta 3481 acatcaagct tgacaacagg cacctcagca tctacaagtg ctaatagcga acttgttact 3541 agtggatctg ttactggtgg agctgttgcc agtgcttcaa atgatcaatc acattctact 3601 tctgttacca acagcaacag cattgtatct aataccccac aaactacatt gagtcaacaa 3661 gttacctcat cctcaccttc aaccaacaca ttcattgctt ctacatacga tggctctggt 3721 tctattatcc aacattctac ttggttgtac ggtttgatca cattattgtc cttgttcatt 3781 tag