Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_712981 4044 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_712981 VERSION XM_712981.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 4044) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 4044) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 4044) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 4044) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 4044) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 4044) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_712981.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4044 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>4044 /gene="ALS5" /locus_tag="CAALFM_C603690WA" /db_xref="GeneID:3640277" CDS 1..4044 /gene="ALS5" /locus_tag="CAALFM_C603690WA" /note="ALS family adhesin; highly variable; expression in S. cerevisiae causes adhesion to human epithelium, endothelium or ECM, endothelial invasiveness by endocytosis and, at high abundance, ECM-induced aggregation; can form amyloid fibrils" /codon_start=1 /transl_table=12 /product="Als5p" /protein_id="XP_718074.2" /db_xref="CGD:CAL0000191115" /db_xref="GeneID:3640277" /translation="MIQQFTLLFLYLSFATAKAITGIFNSIDSLTWSNAGNYAFKGPG YPTWNAVLGWSLDGTSANPGDTFILNMPCVFKFTASQKSVDLTADGVKYATCQFYSGE EFTTFSSLKCTVNNNLRSSIKALGTVTLPIAFNVGGTGSSVDLEDSKCFTAGTNTVTF NDGSKKLSIAVNFEKSTVDQSGYLTTSRFMPSLNKIATLYVAPQCENGYTSGTMGFST SYGDVAIDCSNVHIGISKGVNDWNHPVTSESFSYTKSCSSFGISITYQNVPAGYRPFI DAYISPSDNNQYQLSYKNDYTCVDDYWQHAPFTLKWTGYKNSDAGSNGIVIVATTRTV TDSTTAVTTLPFNPSVDKTKTIEILQPIPTTTITTSYVGVTTSYSTKTAPIGETATVI VDVPYHTTTTVTSEWTGTITTTTTRTNPTDSIDTVVVQVPLPNPTTTTTQFWSESFTS TTTITNSLKGTDSVIVREPHNPTVTTTEFWSESYATTETITNGPEGTDSVIVREPHNP TVTTTEFWSESYATTETVTNKPEGTDSVIIKEPHNPTVTTTEFWSESYATTETITTGP LGTDSIVIHDPLEESSSTTAIESSDSNISSSAQESSSSVEQSSSIVGLSSSSDIPLSS DMPSSSSTGLTSSESSTVSSYDSDSSSSSELSTFSSSESYSSSISDTTNFWDSSSSDL ESTSITWSSSIDAQSSQSVQSVSNSISTSQETTSSSGEESNTSVTDILVSSDASSILN SDISSYYPSSTISLSDDFPHTIAGEPDSRSSSSIASTVEISSDLVSLTSDPTSSFDSS SSLNSDSSSSPFSDESDISASSSFSTLVAPSFSLSSSSSLSLTYPHYVNSTTYHASES ESSSVASPSMASESANDDTHTLSESTDTTSSIGTDSSTVTFCRRDNGDGCIVTGMPSS SIDSEQTSDVTTTSSFVASSTPTSAEQSITDNPNIDSSQTSASSSTKSSVSVSDTVVN SISLSETSTLSSDDSTSSDTSISSTTNSDTGNINAGSSHTSTASIKESSIQKTGVMLS SSYLSTKLSSTSDITTELITTELITTELTTIEDNEPNTFTSTPSSHSEIFSSDNSVLS KQVDRESTIKTSPTTDVTTVSSLSVHSTEASTATLGENSFSNVASTPSNIATSLRSTS SSSNHATESSGTVKSEASAEAIPSPPTSTDNRLSYSTEEAKGITYANSGSTNNLITES QVAAPTDSTSVLIENPVVTSTFDDNSSAAVDQPSKTKSIEESIMNPDSTNETNNGFIA TLSQAQVPNSLIHSESISTTMAKTTDASINGDSAASNSQPTTLIQQVATSSYNQPLIT TYAGSSSATKHPSWLLKFISVALFFFL" misc_feature 169..894 /gene="ALS5" /locus_tag="CAALFM_C603690WA" /note="Cell-wall agglutinin N-terminal ligand-sugar binding; Region: Candida_ALS_N; pfam11766" /db_xref="CDD:403080" misc_feature 1420..1515 /gene="ALS5" /locus_tag="CAALFM_C603690WA" /note="Candida agglutinin-like (ALS); Region: Candida_ALS; pfam05792" /db_xref="CDD:461742" ORIGIN 1 atgattcaac aatttacatt gttattccta tatttgtcgt ttgcgactgc aaaagcgatc 61 actggtattt tcaatagtat tgactcatta acttggtcca atgctggcaa ttacgctttc 121 aaaggaccag gatacccaac ttggaatgct gtgttgggtt ggtcattaga tggtaccagt 181 gccaatccag gggatacatt catattaaac atgccatgtg tgtttaaatt cactgcttcc 241 caaaaatctg ttgatttgac tgccgatggt gttaaatatg ctacttgtca attttattct 301 ggtgaagagt ttacaacttt ttcttcatta aaatgtacag tgaacaataa tttgagatca 361 tctattaagg ctttgggtac ggttacttta ccaattgcat tcaatgttgg tggaacaggg 421 tcatcagttg atttggaaga ttctaaatgt tttactgctg gtaccaatac ggtaacattt 481 aatgatggca gtaaaaagct ctcaattgct gttaattttg aaaagtcaac agttgatcaa 541 agtgggtatt tgactacttc cagatttatg ccgagtctca ataaaattgc tactctttat 601 gtggcaccac aatgtgaaaa cggttacaca tctggtacaa tgggattctc cactagttat 661 ggggatgttg ctattgactg ttcaaatgta catattggta tttcaaaagg agtaaatgat 721 tggaatcatc cagttacgtc tgaatcattt agttacacta aaagctgttc atcttttggt 781 atctctatca catatcaaaa tgttcctgcc ggttatcgtc catttattga cgcttatatt 841 tctccctcag ataataacca gtatcaattg tcgtataaaa atgactatac ttgtgttgat 901 gattattggc agcatgcacc tttcacttta aaatggactg gatataagaa tagtgatgcc 961 ggatctaacg gtattgtcat tgttgctaca actagaacag ttacagacag taccactgct 1021 gtcactactt taccattcaa tccaagtgtt gataaaacca aaacaatcga aattttgcaa 1081 cctattccaa ccactaccat cacaacttca tatgttggtg tgactacttc ctatctgact 1141 aagactgcac caattggtga aacagctact gttattgttg atgtgccata tcatactacc 1201 acaactgtta ccagtgaatg gacaggaaca attacgacga ctacaactcg taccaatcca 1261 actgattcaa ttgacacagt ggtggtacaa gttccacttc caaatccaac tacaactaca 1321 acccagtttt ggtcagagtc atttactagt actactacaa tcaccaactc tttaaaaggt 1381 acagactcag tcattgttag agaaccacac aaccctactg tgactaccac cgagttttgg 1441 tcagagtcgt atgctactac tgagaccatc accaacggtc cagaaggaac agactcagtc 1501 attgttagag aaccacacaa ccctactgtg actaccaccg agttttggtc agagtcatat 1561 gctactactg agacagtcac caacaagcca gagggaacag actcggtcat tatcaaggaa 1621 ccacacaatc ctactgttac caccaccgag ttttggtcag agtcatatgc tactactgaa 1681 acaattacta cagggccact tggtactgat agtatcgtta tacatgatcc attggaagaa 1741 ctgtcttcta ctactgctat tgagtcgagt gattctaata tttcaagctc agctcaagaa 1801 tcatccagtc tggttgagca gtcatcaagt atagttggat tgtcatcaag ttcagatata 1861 ccattaagtt cagacatgcc atcatcgagc tcaactgggt taacatctag tgagtcgtct 1921 actgtctcaa gttatgatag cgattcatca agtagtagtg agttatctac attttctagt 1981 tctgagagct actcgtcaag tatctctgat accacaaact tttgggattc ttcaagttcc 2041 gatttagagt ccactctgat cacttggagt tcctccatcg atgcacaatc tagtcagtcg 2101 gtacagtcag tatcaaactc cattagcaca agtcaggaga caacatcaag ctcaggtgag 2161 gaatccaata cgtcagtcac cgatatttta gtgtcaagtg atgcaagttc tattttgaac 2221 tctgatattt ccagttatta cccatctagc acaattctgc taagtgacga ttttccacac 2281 actatagcag gggagccaga tagccgatca agctcatcaa tagcatctac tgttgagatt 2341 tctagtgatt tggtctctct tacaagtgac ccaacaagca gttttgattc atcttctagt 2401 ttgaattctg actcatcatc tctgccattc agtgacgaaa gtgatatttc ggcttcatct 2461 agtttttcta cattagttgc cccatctttt tcattgagtt caagcagttc attatctttg 2521 acatatccac attatgtcaa ctcaacaaca tatcatgcat cggaatccga aagctcatct 2581 gtcgcttcac catcaatggc aagtgagtca gctaatgatg acacacatac tttgctggaa 2641 tctactgaca ctacatccag tattggcaca gattcttcta ctgtgacatt ttgtcgtcgt 2701 gataacggag atggctgtat tgtaacaggg atgccatcgt ctagtataga cagtgaacag 2761 actagtgatg tgacgacaac ttctagcttt gttgcttcca gcacaccaac ctcagcagaa 2821 cagtctatta ctgacaatcc aaatatcgac tcactgcaaa caagtgctag ttcttcaact 2881 aaatcatcag tttctgtgtc agatacagta gtaaattcaa tttcattatc tgaaacgtca 2941 accttatcat ctgatgacag tacttcttcg gataccagca ttagctcaac aacaaactct 3001 gatactggta atattaatgc tgggtcgctg cacacaagta ctgcttccat caaagaactg 3061 tcaattcaga aaacgggagt aatgttaagt tccagttatt tgtcgacaaa attgagttct 3121 acgtcagata ttactactga acttattact actgaactta ttactactga acttactact 3181 atcgaagata acgaaccaaa cacttttact tcaactccgt caagtcattc tgaaatattt 3241 tctagtgata atagtgtttt atcaaaacaa gttgatagag aaagtactat taaaacttct 3301 cctacaacgg acgtcactac agtatcatct ttatcagtac attcaacaga agcttctact 3361 gcaacactcg gagaaaattc atttagcaat gttgccagta ctccactgaa tattgcaaca 3421 tctttaagat caacaagttc atcatcaaat catgctaccg aatcaagtgg aacagttaaa 3481 agtgaagcaa gtgcagaagc aattccttct ccacctactt caactgacaa cagactaagc 3541 tattcaactg aagaagccaa aggtattaca tatgctaatt caggttctac aaataacctc 3601 ataaccgaat ctcaagtggc cgctccaaca gattctactt cagtgttgat tgaaaaccca 3661 gtagtaactt cgacctttga tgataactcg tcagcagctg tggatcaacc aagtaaaact 3721 aagtcgattg aagaatctat tatgaatcct gattcaacca atgaaactaa caatggattt 3781 atcgctactt tatcacaagc tcaagtacca aattccttga ttcattcaga gtcaatactg 3841 actacgatgg ctaaaacaac tgatgcttcg ataaatggag acagtgctgc ttcaaactca 3901 cagccaacca cattaattca acaagtagca acttcctcct acaatcaacc ccttattact 3961 acttatgccg gatcttcatc cgccactaaa catccttcct ggttgcttaa atttattagc 4021 gttgcattat tcttcttctt atga