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LOCUS XM_712979 1479 bp mRNA linear PLN 18-APR-2022 (POP2), partial mRNA. ACCESSION XM_712979 VERSION XM_712979.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1479) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1479) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1479) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1479) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1479) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1479) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_712979.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1479 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1479 /gene="POP2" /locus_tag="CAALFM_C603650CA" /db_xref="GeneID:3640301" CDS 1..1479 /gene="POP2" /locus_tag="CAALFM_C603650CA" /note="Component of the Ccr4-Pop2 mRNA deadenylase; heterozygous null mutant exhibits resistance to parnafungin and cordycepin in the C. albicans fitness test" /codon_start=1 /transl_table=12 /product="CCR4-NOT core DEDD family RNase subunit" /protein_id="XP_718072.1" /db_xref="CGD:CAL0000180752" /db_xref="GeneID:3640301" /translation="MNVNPHLQYLQQQQQQQQQQQQQQQQSQPSQSNQSQSNQSPQFS QLQLQQLQRQQLLNQHLQQQQSQSQSSQVPPQLTQQSMGTPTSTNPLLAVLNGGANSN ATSTGNGSLSSNPVLQQLQLQQLQQQVQLQQLQAQQQQQQQQQQQQQAIPIIKEVWSS NLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDYHFQTLRANSDLLN LIQLSLCVIKISKNETISTPVIWQFNFLYDLTKEMYNEEHLAMLAQTSQINFQLLSTH GIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFYWWCAK YFPNFYDLKYIGNQILNKSTTNGAGGTNSNTLDEKTNKPSIEYLAEELHLLPISPAIR QHFTNSTFHSQQLTSTLHAYLSMECFKELLRRSNMTLLSSFKGTIWGLGTFSGGTSIN NTNNNGVTEDEIVASRINGISTPSTPVGIISKSGMVHFGGRV" misc_feature 451..>1059 /gene="POP2" /locus_tag="CAALFM_C603650CA" /note="CAF1 family ribonuclease; Region: CAF1; cl23804" /db_xref="CDD:474062" ORIGIN 1 atgaatgtta acccacatct tcaatattta caacaacagc aacaacaaca acagcaacag 61 cagcaacagc aacaacagtc gcagccactg cagtcgaatc aatctcaatc aaaccaatca 121 cctcagtttt cccaattaca attacaacaa ttgcagagac aacaattatt aaatcaacat 181 ttacaacaac aacagctgca actgcagctg ctgcaagtgc caccacaatt gacgcaacag 241 ctgatgggga ctccaacatc aactaatcca ctattggcag tattaaacgg aggtgccaat 301 tcaaatgcca catctactgg taatggttca ttatcatcaa atccagtgtt acaacaatta 361 cagttacaac aactccaaca acaggttcaa cttcaacaat tacaagctca acaacaacaa 421 cagcagcaac agcaacagca acaacaggct ataccaatca taaaagaagt atggagtagt 481 aatttggaac acgagtttca agccttaaga acatttatca atgacaaaac ctcaaaagtt 541 tttattgcca tccatcaaga aattcctggt atagttgctc gaccagtggg gacttttaaa 601 tcttcttcag attatcattt tcaaacatta agagccaatt ctgatttgtt gaatttgatt 661 caattatcat tatgtgtcat caaaatatcg aaaaatgaaa ctatcagcac cccagtaatt 721 tggcaattta atttcttgta tgatttaact aaagaaatgt ataatgaaga acatttagcc 781 atgttggcac aaacctcaca aattaatttc caattacttc tgacacatgg tatcccccat 841 tttgaatttg ctgaattgat gattgaaagt gggttaattc tagatgataa tataaattgg 901 gtttcattcc atgctggtta tgatttaggt ttctttgtta gtttattact gaatgatgat 961 ttaccagtag atgaacctga cttttattgg tggtgtgcca aatatttccc aaacttttat 1021 gacttaaaat acattggaaa tcaaatatta aacaaatcta caacaaatgg agcaggagga 1081 accaattcaa atactttaga tgaaaaaaca aataaacctt caatcgaata tttggcagag 1141 gaattacatt tattgcccat atcaccagca attcgacaac attttaccaa ttctactttc 1201 cattcacaac aattaacttc tacattacac gcttatttgt cgatggaatg tttcaaggaa 1261 ttgttaagac ggtcaaatat gacattattg agcagcttta aaggtactat ttgggggttg 1321 ggtactttta gtggcggcac cagcattaac aatacaaata ataatggggt cactgaagat 1381 gaaattgttg cttcaagaat taatggaatt tccacacctt ccactcctgt tgggataatc 1441 agcaagagtg gtatggttca ttttggtggt agagtgtaa