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LOCUS XM_712956 3486 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_712956 VERSION XM_712956.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 3486) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 3486) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 3486) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 3486) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 3486) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 3486) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_712956.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3486 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>3486 /locus_tag="CAALFM_C603460WA" /db_xref="GeneID:3640252" CDS 1..3486 /locus_tag="CAALFM_C603460WA" /note="Nucleoporin component of central core of the nuclear pore complex; mRNA binds She3" /codon_start=1 /transl_table=12 /product="FG-nucleoporin" /protein_id="XP_718049.2" /db_xref="CGD:CAL0000184906" /db_xref="GeneID:3640252" /translation="MPDRKRSLSPNTETSFNNQNYNQNSSESSNKLSNGSLKFKPSTT ATANESYKSNQSTTYSPRGRKQDQIDNDIDLDGPLLTNFESSDKRKRLSIQGHPPASG IPRSSVYNSESLPQNKLRSYSIICTDLKTSEEELNNDLEVRVTTKDNYNRSIGVSDVE DSSMSRDVSPFVNLPHAPNSDIITGAAKYNDEYDDDKISDRGSVVYNEGALVVQKEFG SLYQDEDGNLIRPPFINLDPRERYQLLQLKRSIELSESLQKRIKYMINPNETNGKRIP GTNKVEMSTQTHDLNYLSTKLNFKKRSPSLSFDRTEVSRPIKKPKRKGFAMKEFLYDV NEEKPVSSTSSLNGALGSITKPKFNSQPKTQDKSMTQIIPREDEEPSFKTFGNKTGRD RETFGVINNAKLTLDPEYLEKTSSSSISDIIKLKEPTTLESSKPNKPTTGPSSGFKFD IKKNDFESIINDRKQNQEILAKSKLANETVPENVKSTDSNQSAKPGLFGSKPVPSQEA PKKKRNLSDSESDDKPPVPSFSFGSANTSKSATPSLFGNKEKSSTTTSLFNITNPKSN EDKDTATTTKPLFAKLSTESETIFDKPKFTFGAPASSNKPTFSFGKTPDSAEKEATPN SKPSLFGDAFKASDKTESSTTSKPSFSFGFNNATTTPFSLGGGEKKDTTPSSTPFTLG KTDTTKDDTKPTETTSLFGDKSKSGSTTPFTFGQKDDKAAGDSKEEDKSASTTKPSST GFTFGAPAKTTESNDGSKGESNNDAASSTTATTTSSTPFKFGITNKASTDAEDKKTEE PATKKFNFATPSTDKPSTPFSFPSANSSSTSKPAFSLGGIGTTDNKEKKDTSSSPSIT QSTTAPPLTSSTFSFNTKKPDAPATTATTDADAAKSSSNSGFKFAAGVNPPSQTTSNK PPSIFNFGAASQPSATPVFAGFGQPPQPANTSGGAFGGKSSFGQGTNNAFGNTGGIFG NKTAATPGGNVFGGMNNQSSTSTPATTNVFGGPTAGAATTNVFGSRPTTPAFNFGGAA TTTAAPAAAAPSGFGAIVNKPPSFNFTGSKESTPDPASVFGQQNRSGTSTPFSSGGVG AGAPGVAGNVFGQPGQQPGIFGGTTNNNSFTFGGAPSAPAASGVPGVPGGMNMPVITP APNPRRILHPRSRRR" misc_feature <871..1599 /locus_tag="CAALFM_C603460WA" /note="DNA topoisomerase 2-like protein; Provisional; Region: PTZ00108" /db_xref="CDD:240271" misc_feature <1405..2568 /locus_tag="CAALFM_C603460WA" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" misc_feature <2767..3450 /locus_tag="CAALFM_C603460WA" /note="PPE-repeat protein [Function unknown]; Region: PPE; COG5651" /db_xref="CDD:444372" ORIGIN 1 atgccagata gaaaaagatc attaagtcca aataccgaga catcttttaa taaccaaaac 61 tataatcaaa actcaagtga atcatcaaat aaattatcca atggttcttt gaagtttaaa 121 ccttcaacta ctgcaacggc aaatgaatcc tacaaatcca atcagtcaac aacatactct 181 ccacgtggaa gaaaacaaga ccaaatcgat aatgatatag atttagatgg accattatta 241 actaactttg aatcatctga caaaagaaaa cgtttgtcca tacaagggca ccctccagca 301 tcaggaatac cacgatcatc agtttataac tcagaatcgt tgccacagaa taaattacga 361 tcatacctga taatatgtac cgatttaaag actagtgaag aggaattgaa caatgatcta 421 gaagttcgag tgacaacaaa agacaattat aacagatcaa tcggagttag tgatgttgag 481 gattcctcaa tgagtcgtga tgtctcacca tttgttaact tgccacatgc accaaactct 541 gatattatta ctggtgcagc aaagtacaat gatgagtatg atgatgacaa aattagtgat 601 aggggtagtg ttgtatataa tgaaggagca ctagtagtgc aaaaggagtt tggatcattg 661 taccaagatg aagatggaaa tcttatacgt cctccgttta tcaatttaga tcctcgtgaa 721 agatatcaat tgttacagtt gaagcgatca attgaattat ctgaatcctt acagaagcgg 781 ataaagtata tgatcaatcc caatgaaact aatggtaaaa gaattccagg aaccaataaa 841 gtggaaatgt caactcaaac acatgatctt aattatttgt cgacaaaatt aaacttcaag 901 aaaagatcac cttcattatc attcgaccga actgaagtgt ctcgacctat taaaaaacca 961 aaaagaaaag gatttgctat gaaggagttt ttgtatgatg ttaacgaaga aaaaccagtt 1021 tcttcaacat cttctttgaa tggtgctttg ggtagcatca ccaaaccaaa attcaattct 1081 caaccaaaaa cacaagacaa atcaatgaca caaataatac ctcgtgagga tgaggaacca 1141 agtttcaaaa cttttggcaa caaaactggt cgtgatcgtg aaacctttgg ggtcattaat 1201 aatgccaaat taacattaga tccagaatac ttggaaaaga ctagctcgag ttctatatcg 1261 gatataataa aactaaaaga gccaaccact ttggaaagct ccaaaccaaa taaaccaacg 1321 actggtccat cttctgggtt taagtttgat atcaagaaaa atgattttga aagtattatt 1381 aatgatcgga aacaaaacca agaaatattg gcaaaatcta aattggctaa tgaaactgtt 1441 ccagagaatg tgaagagcac tgacctgaac caaagtgcca aacctggttt atttggttct 1501 aaacccgtac catcacaaga agctcccaaa aagaaaagaa acttatctga ttctgagagt 1561 gatgacaaac caccagtgcc ttcttttctg tttggatctg ctaatacctc aaagtctgcc 1621 actccttcac tttttggtaa caaggaaaag agctcaacca caacttcatt gtttaatata 1681 actaatccga agtctaatga ggacaaagat acagctacga ccacaaaacc tttatttgcc 1741 aaactttcaa ctgaatctga aaccattttc gacaagccaa agtttacttt tggtgcacca 1801 gcttcttcaa ataaaccaac ttttagtttt ggtaagaccc cagattctgc tgaaaaagaa 1861 gcaacaccta attctaaacc aagtctattt ggtgatgcct tcaaagcttc tgacaagact 1921 gagtcttcta ccacatctaa gccgtcattt tcttttgggt ttaacaacgc tacaactacg 1981 ccattttcat tgggtggtgg cgagaagaaa gatactacac cttcaagtac acctttcacc 2041 ttaggaaaaa ctgacaccac taaagatgat actaaaccaa cagagacaac ttcattattt 2101 ggtgacaaat ccaaaagcgg ctctacaacg ccattcacat ttggacaaaa agatgataag 2161 gctgctggag attcaaaaga agaagacaaa ctggcttcaa caactaaacc atctagtaca 2221 gggtttacct ttggagcacc tgctaaaact actgaaagca atgatggatc taaaggagaa 2281 tcaaataatg atgctgcttc aagtacaact gcaacaacaa catcgtcaac tcccttcaag 2341 tttggtatta ctaataaagc aagcacagat gcagaagata aaaaaaccga agaaccagcc 2401 actaagaaat ttaattttgc aactccatca acagataaac cttcgactcc attctcattc 2461 ccaagtgcca atagtagcag tacatcaaaa ccagcgttca gtttaggtgg tattggaaca 2521 actgataaca aagagaagaa ggacacatcg agttcaccgt ctattacaca atccacaact 2581 gcccctcctc ttacatcatc cacattttct ttcaatacta aaaaaccaga cgcgccagct 2641 actactgcca caaccgatgc tgatgctgct aagtctctgt ccaattctgg attcaaattt 2701 gcagcaggag tgaacccacc atcacaaact acaagcaata agccaccatc aatattcaac 2761 tttggtgccg catcacaacc atcagctaca cctgtgtttg caggatttgg acaacctcca 2821 caaccagcca atacttctgg cggagcgttc ggtggtaaga gttcgtttgg tcaaggtaca 2881 aataatgcat ttggtaatac tggtggaata tttggtaata agactgctgc aacaccaggc 2941 ggtaatgtat ttggtggaat gaataatcaa agttctactt ctacgccagc tacaactaat 3001 gtttttggcg gcccaactgc tggtgctgca acaacaaatg tatttggaag ccgtccaacc 3061 acacctgcat tcaactttgg tggagcagct accactactg cagctcctgc tgctgctgct 3121 cctagtggtt ttggtgcaat tgttaataaa ccaccactgt ttaatttcac tggtagtaaa 3181 gagtctactc ctgatccagc tagtgtattt ggtcaacaga atagaagtgg tacctctaca 3241 ccttttagta gtggtggagt tggtgctggt gctcctggtg ttgctggtaa tgtttttgga 3301 caaccaggtc aacaaccagg gatatttggt ggtactacta ataacaattc attcacattt 3361 ggtggtgccc ctagcgcgcc tgctgcttct ggtgttcctg gtgttcccgg tggaatgaat 3421 atgccagtga taactccagc tcctaatcct cgtagaattc ttcatcctag atcaagaaga 3481 agataa