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LOCUS XM_712953 2307 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_712953 VERSION XM_712953.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2307) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2307) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2307) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2307) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2307) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2307) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2307 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2307 /locus_tag="CAALFM_C603440WA" /db_xref="GeneID:3640274" CDS 1..2307 /locus_tag="CAALFM_C603440WA" /note="Ortholog(s) have rRNA binding activity, role in RNA splicing, mitochondrial RNA processing, mitochondrial genome maintenance, rRNA metabolic process and mitochondrion localization" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_718046.1" /db_xref="CGD:CAL0000174731" /db_xref="GeneID:3640274" /translation="MIRLIRWNNVQSLVFKRCLFVPSNSLTNKRKRRIPPSKPRSSNR KDGDIEPYRMTDQNQTPNTGSIARLPAEVKKELKDLRSFTKVIAQHLKPEQENDSLTS AEKPDTSQLPPIDIEEATDDIFGEISGTKKLSANAVPPPPPPPGLDIPDEIKERLGLL SELLVPAKTSNNKLPEKQVENNWKLLLSQLDQAGGLSGLSKRSVSKFFSKIPPKNLKN LIPMIENMYNKAEMSIPHPIYYMFVRSLTLGDKISDSQMQLINKYFQEISKQTDLKID HYETMILAYVKNNHMEKIDGILAQMKKKNIEISKMIYTSIVRGYIFYQKDHQRALDTF DSMKFLSQKTQPDEKVYTDVIVSCVMHREIERALDLYYELKDKGMNVNQNLLSTLAKG CSRSKQFKTQAWNFLFQVYDHGWVPNLQTYEHMLYIAARDGDVELTRVLFYKMLQTNS VTIRAFRYLILSYSKYVPPHKRKEKHLILLNHKGQLFRQNILQDVDFSKPVHGFPFLP SSHIPDSKFVLAESSAIWAHTVMNNPSFLRQQTLVASYVSIALELGDFTEFKDRFDSA SYLNTDGIPKVREIEIIEPRQDEPTEKATTTEEQNASSETDNNSLIRSPILNQLQQNI NDNQFKAPRDSYLYNLAIKAAGKFKNYGFAQEILHERGQFRKSNSFKLLSPKQQNQDD FQFAGYLVECWTNMNLLEDAYAVVLSSVDRFPWSWRELGVLNNAAMKLGSLELAEAVR KVAQVTQVKHHGKIKRQDFKTYVMKRGY" misc_feature 829..912 /locus_tag="CAALFM_C603440WA" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature <868..>1257 /locus_tag="CAALFM_C603440WA" /note="maturation of RBCL 1; Provisional; Region: PLN03218" /db_xref="CDD:215636" misc_feature 928..1026 /locus_tag="CAALFM_C603440WA" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1042..1131 /locus_tag="CAALFM_C603440WA" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1069..>1395 /locus_tag="CAALFM_C603440WA" /note="Pentacotripeptide-repeat region of PRORP; Region: PPR_long; pfam17177" /db_xref="CDD:407303" misc_feature 1255..1341 /locus_tag="CAALFM_C603440WA" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" ORIGIN 1 atgatacgac taataagatg gaacaacgta caaagtttag tgtttaaacg gtgcttattt 61 gtgccgagca acagtcttac caataaacga aagagaagaa tacctccatc gaaacccaga 121 tcatcgaata ggaaagatgg agatatcgag ccatatagaa tgactgatca gaatcagaca 181 ccaaataccg gttctatagc aagattacct gccgaggtca agaaagaatt aaaagatctt 241 cggagtttta caaaagtcat cgcacaacat ctaaaaccag aacaggaaaa tgattcatta 301 acatcggctg aaaaaccaga tacatcccaa ttacctccca tagatataga agaagccact 361 gatgatattt tcggagaaat ttcaggtact aaaaaattgt cggcaaatgc agtgccacca 421 ccacctccac cacctggctt agatatcccc gatgaaatca aagaacgttt agggttatta 481 tcagaacttt tagtgccagc gaaaaccagt aataacaagt tacccgagaa acaggtggaa 541 aataattgga aattattatt atcacaacta gatcaagctg gaggtttatc tgggttatct 601 aaacgaagtg tttctaaatt tttcctgaaa atcccaccta aaaacttgaa aaacttgatt 661 cctatgattg agaacatgta caataaagca gaaatgagta tacctcatcc aatatattat 721 atgtttgtcc gttcattaac tttaggggat aaaatctccg attctcaaat gcaattgatt 781 aacaaatatt tccaagaaat atcaaaacaa acagatttga aaattgacca ttatgaaaca 841 atgatacttg catacgtgaa aaacaaccat atggagaaga ttgatggaat tttggcacag 901 atgaaaaaga aaaacattga aattctgaaa atgatttata catccatagt taggggttac 961 attttttatc aaaaagatca ccaaagggca ttggatacgt ttgattcgat gaaattctta 1021 tctcagaaaa cccaaccaga cgaaaaagtg tataccgatg ttatagtttc ctgtgttatg 1081 catcgagaga ttgaaagagc attggacttg tattacgaac tcaaagataa gggtatgaat 1141 gtgaatcaga atttgctctc tacattagct aagggatgtt caagactgaa acagtttaaa 1201 actcaagcat ggaacttttt gtttcaagtt tatgatcatg gatgggttcc aaatttgcaa 1261 acatatgaac atatgcttta tattgctgca agagatggag atgtcgaatt aacaagagta 1321 cttttttata aaatgcttca aacaaattca gttactatcc gagcatttag atatttgatt 1381 ttgtcctatt ccaaatatgt cccaccacat aagagaaagg aaaaacattt gatcttatta 1441 aatcataagg gtcagttgtt tagacagaat attttacaag atgttgattt tagtaaacct 1501 gtacatggat tccccttctt gccatcttca catatcccag actcgaaatt tgttttggct 1561 gaatcaagtg ctatttgggc acatacagtt atgaacaatc catccttttt aagacaacaa 1621 acattggttg cctcatatgt atctattgct cttgaacttg gcgattttac tgaatttaaa 1681 gaccgattcg acagtgcctc atatttgaat actgatggaa taccaaaagt aagagaaata 1741 gaaattatag aaccccggca agatgaacca accgaaaaag caaccactac cgaggaacaa 1801 aatgcgctga gtgagactga caacaacagt ttaatcagat cgccaattct taaccaactt 1861 caacaaaata tcaacgataa tcaatttaag gcaccgcgtg attcatatct ttataatctt 1921 gccattaaag cagcaggtaa atttaagaat tatggatttg cacaggaaat acttcatgaa 1981 agaggacaat ttagaaaatc taatagtttt aaattattat caccaaagca gcaaaatcaa 2041 gatgatttcc aatttgctgg atatttagtg gaatgttgga caaatatgaa tttattagag 2101 gatgcttatg cagttgtatt actgtcagtg gatcgtttcc catggagttg gcgtgaatta 2161 ggtgttctca ataatgctgc tatgaaactt ggtagtttgg aattggcaga agctgtaaga 2221 aaagtggcgc aagtgactca agtcaaacat catggaaaaa taaaacgaca ggatttcaaa 2281 acctacgtta tgaaacgtgg atactaa