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LOCUS XM_711663 2124 bp mRNA linear PLN 18-APR-2022 (CAALFM_C601350WA), partial mRNA. ACCESSION XM_711663 VERSION XM_711663.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2124) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2124) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2124) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2124) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2124) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2124) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_711663.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2124 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2124 /locus_tag="CAALFM_C601350WA" /db_xref="GeneID:3641642" CDS 1..2124 /locus_tag="CAALFM_C601350WA" /note="Ortholog(s) have ubiquitin-protein transferase activity, role in histone catabolic process, histone ubiquitination and cytoplasm, ribosome localization" /codon_start=1 /transl_table=12 /product="E3 ubiquitin-protein ligase" /protein_id="XP_716756.2" /db_xref="CGD:CAL0000200284" /db_xref="GeneID:3641642" /translation="MSTTQDSKKTTGTYKRSRVSRGGKQQNTAFRGSGGAEPRKGYKK NSNFDENSPSITTTTTIKQQIEEIPEDEQCIICAERIKYAALTPCNHTTCHKCTFRQR SLYERNTCLICRSENDKIIITELIDKDYDEISADQITGFDEKYRIEFTQDYVQKDTLA LLENTCSICRQQQTFPEFKQLIDHAKEIHGKYYCLICSKFKKAFIPELPLYSYKQLQR HQSEGDGNGNGTGTGNDTETGFKGHPECKHCHGKRFYSEDELNVHIRDRHERCHICDQ SNPKTADYYKNYDNLYIHFTKAHYVCSVASCIEKRFVVFRDDLDLTAHMLKEHGGITG SNNRVIIGSNSHHHFSQLSTFNEGNSRRSNNDRWMGEDDDILQQSPEIKRKRFEERAK HYLNYNQTKVEEFQSLNNNFKNKNINAKELLSIYQRDLFIHQTQEELNILIKEFSEFF PPNSDLHKDLISVIKDNVLEVDNTSLPRESFPVLGGLKSNGNINMNSNWVNNNNNNNN NNTTRRTNSPSTINEKFPALAKPTKKNFVNPNSQPIRYTTILKPQPKKKAILMNISQT SNSDYTPNYLNNINNRTSSSSSSSPSMPILGNGSSSGAGGGGGGGFTSSGSSSFASSR NSSSTALDDKKFPTLQKKKQIKKVIIPRVNEVKVADPNSWGKKQSQPSITPNINNDLD GIEIIDKRKQKMKRKQEKLLFSNAI" misc_feature 16..1380 /locus_tag="CAALFM_C601350WA" /note="Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Region: COG5236" /db_xref="CDD:227561" ORIGIN 1 atgtcaacta ctcaagattc gaaaaaaaca accggcactt acaaacgttc aagagtcagt 61 agaggaggta aacaacaaaa cactgcattt cgtggcagtg gaggagcaga accaaggaaa 121 ggatataaga aaaattccaa ctttgatgaa aattcaccat ccatcaccac caccaccacc 181 atcaaacaac aaattgaaga aattcctgaa gatgaacaat gtataatatg tgccgaacgg 241 atcaaatatg ctgcattaac accatgtaat catacaacgt gtcataaatg tacattcaga 301 caacgtagtt tatatgaaag aaacacatgt ctaatatgtc gaagtgaaaa tgataaaatt 361 atcatcactg aattgatcga taaagattat gatgaaatta gtgccgacca aatcactgga 421 tttgatgaaa aatatagaat tgaattcact caagattatg ttcaaaaaga tacattagca 481 ttattagaga atacttgttc tatatgtcgt caacaacaaa ctttcccaga atttaaacaa 541 ttaatagatc atgctaaaga aattcatggc aaatattatt gtttaatttg ttctaaattc 601 aaaaaagctt tcataccaga attaccatta tacagttata aacaattaca aagacatcaa 661 agtgaaggtg atggaaatgg aaatggaact ggaactggaa atgacacaga aacagggttc 721 aaaggtcatc cagaatgtaa acattgtcat ggtaaaaggt tttattcaga agatgaatta 781 aatgttcata ttagagatcg tcatgaacgt tgtcatatat gtgatcaatc taatcctaag 841 accgccgatt attataaaaa ttatgataat ttatatattc atttcacaaa agctcattat 901 gtttgtagtg ttgccagttg tattgaaaaa agatttgtgg tatttagaga tgatttagat 961 ttaacggctc atatgttgaa agaacatggt ggtattacag gaagtaataa tcgagtgatt 1021 attggttcaa attcccatca tcatttttca caattatcaa cttttaatga agggaattca 1081 cgtcgttcta ataatgatag atggatgggt gaagatgatg atatattaca acaatcacca 1141 gaaattaaac ggaaaagatt tgaagaaaga gctaaacatt atttaaatta taatcaaacc 1201 aaagttgaag aatttcaatc tttaaataat aattttaaaa ataaaaatat caatgctaag 1261 gaattattat caatttatca acgggattta tttattcatc aaactcaaga agaattgaat 1321 attttgatta aagaatttct ggaatttttc cccccaaatt cagatttaca taaagattta 1381 atttctgtaa tcaaagataa tgttcttgag gttgataata cttctcttcc acgtgaactg 1441 ttcccagtat taggaggttt gaaaagtaat ggtaatatta atatgaattc aaattgggtt 1501 aataataata ataataataa taataataat acaactcgtc gtaccaattc accatcaact 1561 attaatgaaa aattcccggc tttagctaaa ccaacgaaaa agaattttgt gaatcctaat 1621 agtcaaccca ttagatatac cactatttta aaaccacaac cgaaaaagaa agcaattttg 1681 atgaatatat ctcaaacatc aaatagtgat tataccccaa attatctaaa caatatcaat 1741 aatagaacct cgtcatcatc atcatcatca ccatcaatgc caatattagg caatggcagt 1801 agtagtggtg caggaggagg aggaggagga ggatttacta gtagtggcag ttcctcattt 1861 gcatcatcta gaaacagttc aagtacagca ttagatgata agaaatttcc aacattacag 1921 aaaaaaaaac aaattaaaaa agtgataata ccaagagtta atgaagtgaa agttgctgat 1981 ccaaattcat ggggtaaaaa acaatctcaa ccaagtatca ccccaaatat taataatgat 2041 ttggatggta ttgaaataat tgataaaaga aaacaaaaaa tgaaacggaa acaagagaaa 2101 ttgttattca gtaatgcaat ctaa