Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_711639 1800 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_711639 VERSION XM_711639.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1800) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1800) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1800) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1800) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1800) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1800) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_711639.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1800 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1800 /locus_tag="CAALFM_C601620WA" /db_xref="GeneID:3641647" CDS 1..1800 /locus_tag="CAALFM_C601620WA" /note="RING/FYVE/PHD zinc finger protein; Spider biofilm induced" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_716732.2" /db_xref="CGD:CAL0000181019" /db_xref="GeneID:3641647" /translation="MSTTIPTSSSLLQATETMSQSTYSSIPTSTANDFGSQNTTIGST PSTVLFFLALAVGVLIALIFVFFTIRYFVRAKYGVNYVGLTRRGLYGYNHHVNGNNNG NQPPSSNIVNEHTFAQIFTTTEVQDQLDYIRQHHYLRGEIIDRRLNQDDEDSSNDAAR QRQQQRRRRRQRRRRRGGRFARMKKLTAEEVELLFPKKTYHQWLNGGKEEDVENREDL FCEVKEEEQHHHEEDIQNENNGQSSSDDNNNNNNIGGTVVDDENHNCSSSQTEDNEST NTLFTARTSDMNNRNSSINNNNNNNNNNNNNNNNNNDNDEEIEMKQLNLAEVNSKNDS NDSQNSLHFDSGSCAICLEIIEDEDIVRGLICGHVFHAECLDPWLIRRRACCPMCKRD YLFKRDYQNHNGNNNNTAENTNTQNDQTNNNSSNEINEDDDEDDDDLHTIDFDIEEFR NNPSLQMMLQELIPPAERVRILLEDPRYSDLNFEERAREIAKRKYSNIFKIIWWKIMG ISKLDFYHWGVLKLIEKHHHDHPEGTESTTENNQPQAQQQQQQQQDQQQDQDAADSAS NSRNTHEARSSRDMEELGDVSEATRTETVMNRV" misc_feature 1030..1182 /locus_tag="CAALFM_C601620WA" /note="RING finger, H2 subclass, found in RING finger protein 103 (RNF103) and similar proteins; Region: RING-H2_RNF103; cd16473" /db_xref="CDD:438136" ORIGIN 1 atgtcaacga cgataccaac gtcttcatca ttactacaag cgacagagac catgtcacaa 61 agtacatatt cttcaatacc cacatccact gccaatgatt ttggatcaca aaacactacc 121 attggttcaa ccccttcaac agtactattt tttcttgcat tagcagttgg agttttaatt 181 gccttaatat ttgtcttctt caccatacga tattttgttc gagcaaaata tggtgtcaat 241 tatgttggac tcactagaag aggactttat ggttataatc atcatgttaa tggcaataat 301 aacggaaatc aaccgccatc atcaaatatt gttaatgaac atacatttgc gcaaatattt 361 accacaacag aagtacaaga tcaacttgat tatattcgac aacaccatta tttacgtgga 421 gaaataattg atcgaagatt gaatcaggat gatgaggact catcaaatga tgctgcaaga 481 caaagacaac aacagcgaag acggagaaga caacgaagaa gaagaagagg tggaagattt 541 gccagaatga aaaaattaac tgctgaagaa gttgaattat tattccccaa aaaaacttat 601 catcaatggc ttaatggtgg gaaagaagaa gatgttgaaa atcgagaaga tttattttgt 661 gaagtgaagg aagaggagca acaccaccat gaagaagata ttcaaaatga aaacaatggt 721 caatctagta gtgatgataa taataataat aataatattg gtggcactgt tgttgatgat 781 gaaaatcaca attgttcttc tagtcaaaca gaagataacg aatcaacaaa tacattattt 841 acagctcgaa cttcagatat gaataacaga aacagcagca ttaataataa taataataat 901 aataataata ataataataa taataataat aataatgata atgacgagga aattgaaatg 961 aaacaattaa atcttgctga agttaattcc aaaaatgatt ccaatgattc tcaaaatagt 1021 ttacattttg attcaggatc atgtgctatt tgtttagaaa taattgaaga tgaagatatc 1081 gttcgtggat taatatgtgg acatgtattt catgcagaat gtttagatcc ttggttaatc 1141 agaagacgtg cttgctgtcc tatgtgtaaa cgtgattatt tatttaaaag agattatcaa 1201 aatcataatg ggaataataa taacactgct gaaaatacga atacccaaaa tgatcaaaca 1261 aataataata gcagtaacga gataaatgaa gatgacgatg aagatgacga tgatttacat 1321 acaattgatt tcgatattga agaattcaga aataatccaa gtttacaaat gatgttacaa 1381 gaattaatcc caccagctga aagggtaaga attttacttg aagatccgag atatagtgat 1441 ttgaattttg aagaaagagc tcgtgaaatt gccaaacgga aatatagtaa tattttcaaa 1501 atcatatggt ggaaaataat ggggatttct aaacttgatt tctatcattg gggtgttctt 1561 aaactaattg aaaaacatca ccatgatcat cccgaaggaa cagaatcaac tactgaaaat 1621 aatcaaccac aagcacaaca acaacagcag cagcaacaag atcaacaaca agatcaagat 1681 gccgctgata gtgccagtaa ctctaggaat acacatgaag caaggagttc acgagatatg 1741 gaagaattag gtgacgtctc tgaagcaaca aggacggaaa cggttatgaa tagggtttaa