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LOCUS XM_711638 1368 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_711638 VERSION XM_711638.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1368) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1368) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1368) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1368) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1368) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1368) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_711638.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1368 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1368 /gene="TIF3" /locus_tag="CAALFM_C601630WA" /db_xref="GeneID:3641646" CDS 1..1368 /gene="TIF3" /locus_tag="CAALFM_C601630WA" /note="Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage" /codon_start=1 /transl_table=12 /product="Tif3p" /protein_id="XP_716731.2" /db_xref="CGD:CAL0000196640" /db_xref="GeneID:3641646" /translation="MAPPKKNVKMDLGSFLADDTFGGGSWADEEVDLNTIGVSLETPS FAGSTAAPIGNVGGGNNTASAGSGFGSGSGSGFGNDEFKRERKEFPIPDQPPYRARVS NLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFAFVTFNDRALLEESLN LSMTEFQGRKIYVNVAAPPKGEDGDWRAGRSGSNRRGGEDREPAPELDWGAARNSQAE LPPRQRSNRLGSGSGPSGESSSSSRPSRRQEVELDWGSARNSRDGLPPQRERSNRTPR KQEPEFDWNTARNTQAELPVRERERPQRENPDGTPRENSTRQTPRKQEPEFDWGAARN TKTSLPPRERLNRTGSNSGKKSTEPDFDWKRGQSLPSRNVSRSSGNRKDVKKDEQQNQ PPKPQKSHFSVLNVEGEDEDEEEDEKKEVKESKQQIDNLQQATSKLTVSEGQEDGEGW EVVRK" misc_feature 283..528 /gene="TIF3" /locus_tag="CAALFM_C601630WA" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" ORIGIN 1 atggcaccac ctaaaaaaaa tgttaaaatg gacttagggt ctttcttggc tgatgacacc 61 tttggcggag gatcatgggc tgatgaagaa gttgatttaa acactattgg tgtttcatta 121 gaaactccaa gttttgctgg atcaactgcg gctccaattg gtaatgttgg tggtggtaac 181 aatactgcat cagcaggttc tggttttgga tccggttctg gttctggttt tggtaatgat 241 gaattcaaaa gagaaagaaa agaatttcct attcctgatc aaccaccata tcgtgccaga 301 gtatctaatt taccatggga agttgaagaa agtaacgtta ttagacattt tgaagataga 361 atgcaagcca aagatattat ttccgatatt gttttaccaa aagatagaga cactggtaga 421 ttaagaggat ttgcctttgt tacattcaat gatcgtgctt tattagaaga atccttgaat 481 ttatccatga ctgaattcca aggaagaaaa atttacgtta atgtggctgc tccaccaaag 541 ggtgaagatg gtgattggag agctggtaga tctggaagca atagaagagg tggtgaagat 601 cgtgaaccag ctccagaatt ggattggggt gctgccagaa attctcaagc tgaattacca 661 ccaagacaaa gatcaaacag attaggtagt ggtagtggtc catcaggcga atcatcatca 721 tcatctagac catcaagaag acaagaagtt gaattggatt ggggttccgc tagaaattca 781 agagatggat taccaccaca aagagaaaga tcaaatagaa caccaagaaa acaagaacca 841 gaatttgatt ggaatactgc tagaaacact caagctgaat tacctgttag agaaagagaa 901 agaccacaaa gagaaaaccc tgatggaact ccaagagaaa actctactag acaaacacca 961 agaaagcaag aaccagaatt tgattggggt gctgccagaa acactaaaac cagtttacca 1021 ccaagagaaa gacttaatag aactggttcc aacagtggta aaaaatcaac tgaacctgat 1081 ttcgattgga aaagaggcca aagtttacca tcacgtaatg tttcaagatc aagtggtaac 1141 agaaaagatg ttaaaaaaga tgaacaacaa aatcaaccac caaaaccaca aaaatcccat 1201 ttcagtgttt taaacgttga aggagaagat gaagatgaag aggaagacga aaagaaagaa 1261 gtaaaggaaa gcaaacaaca aattgacaat ttacaacaag ctactagtaa attaactgtt 1321 tctgaaggtc aagaagatgg tgaaggttgg gaagttgtta gaaaataa