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LOCUS XM_711626 2526 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_711626 VERSION XM_711626.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2526) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2526) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2526) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2526) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2526) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2526) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_711626.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2526 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2526 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /db_xref="GeneID:3641639" CDS 1..2526 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="Putative guanyl-nucleotide exchange factor; induced in high iron; Hap43-repressed" /codon_start=1 /transl_table=12 /product="Sec12p" /protein_id="XP_716719.2" /db_xref="CGD:CAL0000181490" /db_xref="GeneID:3641639" /translation="MAPKDSASIDVGYPIMGIKFLNNKTILVAGGGGEGNNGIPNKIT AIKSSFKVKDPNRKLQRFREITLPSNEDSPQCIDTAKLVGENKFNVVLGCNQSSQLIK SMNINNNIRKYEYTNEEHLRFVDAAQFEAEINGDADDYPKIVRLAQNNNVGCFMTSIV PSSIYIFNPETLELNYKFIPDKSIEIKDFVLSPHDGNSLCYITSNSINVVATNNTSNV ELSSVSIPNLDKQLKGYVLSKVRYINSDELLLAATFVGKKGAVLLRLNIPNKKIIQTQ VISKKGVIVSMDVSPTKVAVATNDLALTLINLSNLKVLKAFKNLHSWAITSVSFSPSG DKVASVSASGTLVVSKISSIGRSGGSGWFLSVLLALVFGIVAILAAVFPDFATQLTGQ SSLIDYKFFDFAVPVSIVAEKYSSIVSQFLDTKSTTVSSVESKILDNTPSAEIPTTES TFLQSVDHQDPIIDSSEVESADVETTVIEVVVEETTVVENSSVETSIIPSEVREAHTE KSSSIEESHVPSTFIESDVVSSTETSSSVESLVESPVVESSVEETPIVESSPVQPPII EESSSFELEFSESTTESQVVQSSVIESVEEESSLEGTTIIESQSVEPPVVESSSSEIS SVESFSSEPANVESSSTESSVLESSSVRASYIESPSVESLPVESISVESPSTESPTAE SMSVDVSSTEVSSSESPSTDPSSESPSPDVSTVESARVESSSVENPSVETSSVETPST ETPSTETPLTETSSTEPSSAEIPAVESISSESLSVETPSIEVSSAESHSVEPNVTESL SVQSSTAESDTAPSSITSASTKKARVKRTITKKVTRTIKKDEL" misc_feature 427..543 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 559..702 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 709..831 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <841..>1044 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 853..954 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <1966..2466 /gene="SEC12" /locus_tag="CAALFM_C601760WA" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" ORIGIN 1 atggcaccca aagactctgc tagtattgat gttggatatc ccatcatggg aatcaaattc 61 ctcaacaaca agactattct tgtagctggt ggtggaggag aaggtaacaa tgggattcct 121 aataagatca ccgcaatcaa atccagcttc aaggtgaaag atcccaatag aaaattgcaa 181 cggtttagag aaatcacgtt gccttcaaat gaagattcgc cacaatgtat agacaccgcc 241 aaattagttg gcgaaaacaa gtttaatgtg gtacttggtt gcaaccagag ttcacaattg 301 atcaagtcca tgaatatcaa caataatatc agaaagtatg aatataccaa tgaagagcat 361 ttgcgatttg tagatgctgc ccaattcgaa gcagagatta atggagacgc agacgactac 421 ccaaagattg tgagattggc acaaaacaac aatgtgggtt gttttatgac atcaatcgtt 481 ccatcttcaa tttatatttt caatccggaa actttggagt tgaattataa atttatacct 541 gacaaaagta tcgaaataaa agattttgtg ttgagtccac atgatgggaa ttcattgtgt 601 tatattacat caaattcgat taatgttgtt gcaacaaata acaccagtaa tgttgagttg 661 tcgtccgttt ctataccaaa tttggataaa caattaaagg gctacgtgtt gtccaaagtt 721 agatatatca atagcgatga attattactt gcggcaacat ttgttggtaa aaagggtgcg 781 gtcttgttga gactaaatat tccaaataag aaaatcatcc aaacacaagt gatctctaaa 841 aaaggcgtga ttgtgtcgat ggatgtttct cccaccaaag tagctgtggc taccaatgac 901 ttggcattaa cattgattaa tttgtcaaac ttaaaagtgt taaaagcttt caaaaactta 961 cattcttggg caattacaag tgtgagcttt tctccttccg gagacaaagt agctagtgtc 1021 ctggcaagtg ggactttagt tgtttctaaa atttcctcga taggcagatc aggtggctct 1081 ggttggtttt tgctggtgtt acttgcttta gtttttggta ttgttgctat tcttgctgct 1141 gtattccctg actttgctac tcaattgact ggtcaatcgt cattgatcga ttacaaattt 1201 tttgattttg ctgttccagt ttcgattgtg gctgaaaagt actcatctat tgtttcccaa 1261 ttcttggata ctaaatccac tacagtttca agcgtcgaat ctaaaatttt ggataataca 1321 ccaagcgctg aaattccaac cactgagtct acatttttgc agtctgtcga tcatcaagat 1381 ccaattattg attcctccga ggttgaatct gcagatgtgg aaaccaccgt tattgaggtt 1441 gtcgttgagg agaccacggt tgtggagaac tcttctgttg aaacctccat tattccatcc 1501 gaggtcagag aagcacatac tgaaaagtca tcatctattg aagaatcaca tgttccatca 1561 acttttattg aatcagatgt tgtgtcttcg acagaaacat cctcttctgt tgaatctttg 1621 gtggaatcac ctgttgttga atcttcagtg gaagaaactc caattgttga atcttcaccc 1681 gtacagcctc ctattatcga agaatcatct tctttcgaat tagaattcct ggaatcaact 1741 actgagtctc aagttgttca atcatctgtt attgaatctg ttgaggaaga atcgtcactt 1801 gaaggaacta cgatcataga atcgcaatct gtggaaccac ctgttgttga atcttccctg 1861 agtgagatat catctgttga atcattttct tcagaacctg cgaatgtgga gtcatcatct 1921 actgaatctt ccgtcttaga atcttcatct gttcgagctt catatattga atctccatcg 1981 gttgaatcgt tgcctgttga atccatatct gtcgaatctc catccactga atcaccaact 2041 gctgagtcta tgtctgttga tgtttcatct actgaggttt catctagcga gtctccatct 2101 actgatccat cttctgagtc tccatcccct gatgtttcaa ctgttgaatc agctagggtc 2161 gagtcctctt ctgttgaaaa tccatctgtc gaaacttcat ctgttgaaac cccttctact 2221 gaaacccctt ctactgaaac tccacttact gaaacttcat ctactgaacc atcatccgct 2281 gaaattcccg ctgttgaatc tattagtctg gaatctttat ctgttgaaac tccgtctata 2341 gaagtatcat cagcagaatc tcattctgtt gaacccaatg tcactgagtc tttgtctgtt 2401 caaagctcaa ctgctgaatc cgataccgct ccttcatcaa tcacatcggc aagtaccaag 2461 aaagcaagag taaaaagaac aattaccaaa aaggttacta gaactatcaa aaaagatgaa 2521 ttgtaa