Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_711616 2295 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_711616 VERSION XM_711616.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2295) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2295) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2295) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2295) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2295) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2295) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_711616.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2295 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2295 /locus_tag="CAALFM_C601850WA" /db_xref="GeneID:3641629" CDS 1..2295 /locus_tag="CAALFM_C601850WA" /note="Ortholog(s) have histone binding activity, role in histone exchange and Swr1 complex, cytoplasm localization" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_716709.2" /db_xref="CGD:CAL0000192008" /db_xref="GeneID:3641629" /translation="MSDSEEEEVFESLIATRSRRSNAGLRLKQLIALEEQSNELAATT QFLTEDDENVNLLFQEDGEDEEFIDEEVDNANLEGIDEESGTENENENTTRKRKHTSS DGEEEEEEENDTSNINADEILSDSELSATDSDESEGEKELLKQEKLKKKRLKKQSLIP TIKQPSVKSATLKKKQKRTPLVTADSLLLANRRSSSRAAAVESKQALVDKLKESEARR AKYVHVERKQQVELTQEERLAEAVETEKANVESLHRFREQEIVKKERQRQLLLSKRIK LHNVIRLVSSETFVKPIEEVNDARRQYEQYMKIKKKLGKKKKNQLAEMMDFPTRMPFT IDYDSPYQRKLLAEKKAQEQQNEIKKLESMNEKLHELIESGDSKKNDNDEENIQLVPS TNINADNHNNIECEPIKVEDSTQEIKADETDNKDESSDKTNTSISEVAPSDETESTKQ EKISDTEFNEESENTSQTEENGLTNDNPSEVKKEENEQTNKIEETPVDNNKPDVQNLT TDTPLDETKSTETIKRVKFADEIGESSKEPTPTVETSHQQEEEIFEGPVQRVSRNLIY MIEFDEDKKELRLDPSNIKRILFGKQSLLPASRRFKDVKTILKIGKPENPYAVVKDQK QSLFDPASNITEDDPMFDELKKLPKLGVKQDLVEIVEDKEETESANIVLKTEAPTGLY LPNGNKKICMISGTEVKYFDPSTGIPYSSVEAYKILKSIEQGQIPWLSLTNESNDTGN VELYLGCRDGTARHAQGVPEGFDG" misc_feature 49..855 /locus_tag="CAALFM_C601850WA" /note="YL1 nuclear protein; Region: YL1; pfam05764" /db_xref="CDD:461734" misc_feature <502..1572 /locus_tag="CAALFM_C601850WA" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 2068..2154 /locus_tag="CAALFM_C601850WA" /note="YL1 nuclear protein C-terminal domain; Region: YL1_C; pfam08265" /db_xref="CDD:462412" ORIGIN 1 atgagtgatt cagaggaaga agaagttttt gaaagtttaa tagccacaag atctaggcgg 61 tccaatgcgg ggttaagatt gaaacagtta attgcgttag aagaacaatc aaatgagcta 121 gcagcaacaa cccaattttt aacagaagat gatgaaaacg ttaatttatt gtttcaagaa 181 gatggagaag atgaggagtt tatcgatgaa gaagttgata atgccaactt agaaggaatt 241 gatgaagaaa gtggaacgga aaatgaaaat gaaaatacaa cgaggaaacg gaaacatact 301 tcaagcgatg gcgaagaaga agaagaagaa gaaaacgaca cctccaatat aaatgcagat 361 gaaatactat cagattcaga gctatctgct actgattcag atgaaagtga aggtgaaaaa 421 gaattactaa aacaggagaa actcaaaaag aaaagattga agaaacagag tttaattccc 481 accatcaaac agccactggt taaatcagca accctaaaga agaaacaaaa acgaacaccg 541 ttagtcacag cagactcatt actattggca aatagaagat cgtcgtctcg agctgcagct 601 gttgaaagta aacaggcttt agtagataaa ctaaaagaaa gcgaagctag gagggcaaaa 661 tatgtacacg tcgaaagaaa gcaacaggtt gagctaactc aggaagaacg tcttgcagaa 721 gcagtagaaa ccgagaaagc aaatgtggaa tcacttcaca gatttagaga gcaagaaata 781 gtgaagaagg aaagacagcg acagttgttg ttactgaaac gaatcaaatt acataatgtt 841 ataaggctag ttagcagtga gacatttgta aagccaattg aagaagtgaa tgatgcaaga 901 cgccagtacg aacagtatat gaaaataaag aagaaactag gaaaaaagaa aaagaatcag 961 ttagcggaga tgatggattt tcctaccaga atgcccttta caatagatta cgactcaccg 1021 tatcaaagga aactattggc agaaaagaaa gcacaagaac agcaaaatga aattaaaaaa 1081 ctcgagtcaa tgaacgagaa acttcacgag cttatagaaa gtggggactc gaagaaaaat 1141 gacaatgatg aagaaaatat acaattggtc ccgtcaacta acattaatgc ggataatcat 1201 aacaatattg aatgtgaacc gattaaggtt gaagatagta cacaggagat taaggcggat 1261 gaaacagata acaaagacga gtcgagcgat aaaacaaata ctctgatttc tgaagttgca 1321 ccatcagatg aaacagaaag cacaaaacaa gagaaaattt cagatactga atttaatgaa 1381 gaactggaaa atacaagcca aacagaggaa aatgggctta ctaatgataa tcctagcgag 1441 gttaaaaagg aagaaaatga acaaactaac aaaattgagg aaacgcctgt agacaacaac 1501 aaaccagatg tgcaaaacct cacgactgac actccattgg atgaaaccaa aagtacagaa 1561 accatcaaga gggtgaaatt tgccgacgaa ataggagaga gttccaagga gcccacacca 1621 actgtcgaga ctagtcatca acaagaagag gaaatattcg aaggtccagt acagcgtgta 1681 tcgagaaact tgatctacat gatcgagttt gatgaagaca aaaaggaatt gagactcgac 1741 ccactgaaca tcaaaagaat tctatttgga aagcagtcac ttttgcctgc ctcaagaaga 1801 ttcaaagatg tcaagacaat acttaaaatt gggaaaccag aaaatcctta tgctgtggtg 1861 aaagatcaaa aacaaagctt gtttgaccct gcttccaata taactgaaga cgacccaatg 1921 tttgatgagt taaaaaaatt gcccaaatta ggagttaagc aagatttggt agaaattgtg 1981 gaagataagg aggaaaccga gtcagcaaat atagtgctaa aaaccgaagc accaactgga 2041 ttatatctac ctaatggcaa taaaaaaatc tgtatgatat caggtacaga agtgaaatac 2101 tttgatcctt caactggtat tccgtatagt tcagttgaag catacaaaat actcaaatcc 2161 atcgaacaag gtcaaattcc atggttgagt cttacaaacg agtcgaatga tactggcaat 2221 gtcgagcttt accttggatg cagagatggg actgctcgac atgcacaagg tgttccagaa 2281 ggatttgatg gttaa