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LOCUS XM_709243 4614 bp mRNA linear PLN 18-APR-2022 kinase (VPS15), partial mRNA. ACCESSION XM_709243 VERSION XM_709243.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 4614) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 4614) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 4614) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 4614) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 4614) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 4614) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_709243.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4614 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>4614 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /db_xref="GeneID:3644040" CDS 1..4614 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="Protein involved in retrograde endosome-to-Golgi protein transport; required for normal virulence" /codon_start=1 /transl_table=12 /product="ubiquitin-binding serine/threonine protein kinase" /protein_id="XP_714336.2" /db_xref="CGD:CAL0000193001" /db_xref="GeneID:3644040" /translation="MGQKLSLLAPSAPTVAVSSYVDALHNYQYVEVINNSRFLKTIKA IDKTTGNLVTIKLLIKPASPNYSIQLQQVIELMVKQSSLLYPFKNALPWHRLIETDRA GYVVRQMIKTNLYDRLSIRPFLEPIEKLFITYQILKIINEIHSLNIHHGDLKLENFLI TSWNWLLLSDFSNLLKPTYIPEDNPNQYSFYFDTSGRRLCYIAPERFYNSQDHPKHIS NFNDDGSFTMKNSVTDAMDLFSTGCVIAELYNDGEPTFTLSQLFKFMKNEYTPDLSGI YNKDIVTIIGKLIKLDPNERSSAREILDENKGTCFPEFFYSFLYDFMEMLNNQENFVL NANNDNISISDMKISYIYDNFGLISKSLKFQYSMDESNFSRDDILPMKLNLETMPFNY RIKQSKFIDDDSQEAALILLNVVTSFSQTLKQVNSKIKCCELIVALSERIRDESKLDR AIPYLCLFLDEYIEGAFHQQEGPQTASKVVCMALYSLTTLLMSCSYINPINMLIFPEY ILPKIYNLLTVKSDSSSQRLVNCAVAVCLPYLAATAKRFWIMSKAFKNTNNALSTLVS PEDAMQSFSNLSLTKDQLDSKFKEITILLLTDSESPVKISLLNNILPLCQFFGQDKTN DIILPHLISYLNDTDQELRLAFLSSVLQMGPFIGVLSFEQYILPLLVQTIGDGEQFVV LKVLEIFNMFVKERLINPRTEFNALDVYKELLLNSINLLLHPNEWIRQSVINLIISVS ANLTDADKYCFLYPLIKRFLSYDLSIIDWNTLYPCLTKPLTKQIYDLAITWSLNSTSK SLFWQQKNFSMLTTKQSGNNITKKMKKMISFNKDMGKSVYLPQMMSELTFANGSNQKS NSTIPLSSEDKQWLLKLKSIGLDDKSLWKILALRDYIYHVGRSPTSTLNKRLKATTNE ISILPRNIFFTVVYRSEPLSISNGTREERILGSNAEETVSIRTSSRRGSNSLILPQLE RVTASVQTVEANIMGEMETHNSGVNKDGWFNDSNTSHKVFSVSNSKIIVSHIKHTYTG ENPYILNFLKNPKFQPNLSDFEEFGKTIIKHQYSQQQQQQQNQNQQQLKTIDMLPPMN VLVASFRSSDKDNRLEEINALAVCPTSEFFVTGSSTGSLKVWDSLKMEKLVTVKNANL SIELNSSVCSITFLPNRFVVIVTTNDGTIRLFRIDVMRNSKSKKIVRYLKMHLIRKYI HGNDHDGSGNCNGTKKYHRPIEQIKFLQDNYIIGVDATEQKIIMLDIITMTISSELQH PLIYGIINTFIVYKDYWLLVGTDKGVLTLWDLRFKIIVKSWHVKNNENNERLGSINNL ELLSNSIKLFETKNDGGSSGGSSSAYFALSGNDDISIWELPSLECKAILKTSNAVMNS STIMKYSLIEYKDDGNEDELFIEEIIDDIELDIDHEYDRKLNLNVLTMKFFQFNTNNN NNNVDYLMCSTGSNRVILFNLTSIQDSVVLKSDNTIFNTRYYNNVVIIDPVFANDQTL LNGTTKTNMYNVVKLVDHLFEPFHMIITIDRNNCVKLYKAANC" misc_feature 76..945 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(97..108,115..117,121..123,160..162,166..168, 271..273,319..330,454..456,466..471,475..477,505..510) /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" misc_feature 1528..1617 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature order(1813..1818,1825..1827,1834..1839,1846..1848, 1930..1935,1942..1944,1951..1956,1963..1965,2047..2052, 2059..2061,2068..2073,2188..2193,2200..2202,2209..2214) /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293787" misc_feature 1876..1968 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1993..2073 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2104..2217 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 3316..4125 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 3319..3441 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3460..3621 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3673..3783 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3802..3876 /gene="VPS15" /locus_tag="CAALFM_C601190CA" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" ORIGIN 1 atgggacaga aattatcact attggcacca tcagcaccaa ctgttgctgt gtcatcatat 61 gtggatgcac tacataatta tcaatatgtt gaagtgataa ataactcacg atttttaaag 121 acgataaagg caattgataa gacgacgggg aatttagtaa caataaaact tctaattaaa 181 ccagcatctc ccaattactc cattcaatta caacaagtga ttgaattaat ggtaaaacaa 241 tcatcccttt tatatccatt caaaaatgca ttaccgtggc acagattgat tgagactgat 301 cgtgctggtt acgttgttcg acaaatgata aaaacaaact tgtatgatag actatcgatc 361 cgtccatttc ttgaacccat tgaaaaatta tttataacct accaaatttt gaaaatcatt 421 aatgaaatac attccttaaa cattcatcat ggtgatttga aattggagaa ttttttgata 481 acgtcttgga attggttatt attgagtgat ttttccaatt tgttgaaacc gacgtacata 541 ccagaagata atccaaatca atactcattt tattttgaca cttcagggag acgattatgt 601 tatattgcac cagaaagatt ctataattct caagatcatc ctaaacatat tctgaatttt 661 aatgacgatg gtctgtttac catgaaaaat agtgttactg atgcaatgga tttgtttagt 721 acaggatgtg tcattgcaga attgtataat gatggagaac caacgttcac attgtctcaa 781 ttgtttaaat ttatgaaaaa tgaatacact ccagatcttt caggaattta taataaagat 841 atcgttacga taattggaaa actaataaaa ctagatccta atgaacgatc aagtgcacga 901 gaaatattag atgaaaataa aggtacttgt ttcccagaat ttttttacag ttttctttat 961 gattttatgg aaatgttaaa taatcaagag aattttgtat taaatgccaa taacgataat 1021 atatcaatca gtgatatgaa aataagttat atatatgaca attttggatt aattagcaaa 1081 ctgcttaagt ttcaatattc aatggatgag tccaattttt cacgagatga tattttgcct 1141 atgaaattaa atttggagac gatgccattc aactatagaa tcaaacaaag caaatttatc 1201 gatgatgatc tgcaagaagc agcattgatt ttattgaatg tagtgacatc tttttctcaa 1261 acacttaaac aagtcaacag taagataaaa tgttgtgaat tgattgtggc gttatcggaa 1321 cgaatccgtg atgaatccaa attagatcga gccataccat atctatgttt attcttggat 1381 gaatatattg aaggtgcatt tcatcagcaa gaaggtcccc aaactgcttc aaaagttgta 1441 tgtatggcac tttattcatt gactacactt ttaatgtcgt gttcttatat caatccaatc 1501 aatatgctaa tatttccaga atacatttta ccgaaaattt ataacttgct aactgtgaaa 1561 agtgattcta gttctcaaag attagttaat tgtgcagttg ccgtatgtct accgtatttg 1621 gctgctactg cgaaaaggtt ttggattatg tcaaaagcgt ttaaaaatac caataatgct 1681 ttgagtactc tagtgtcacc tgaagatgca atgcaatcgt ttagtaattt atcattaact 1741 aaagatcaat tagatctgaa atttaaagag attaccattt tattattaac tgattcagaa 1801 tcaccagtga aaataagtct acttaataat atcttaccat tgtgtcaatt tttcggacaa 1861 gacaagacaa atgatattat tttaccacat ttaatatcgt acttgaatga tactgatcaa 1921 gaattgagat tggcgttttt atcgtcagtt ttacaaatgg gaccatttat tggggtctta 1981 tcatttgaac agtatatttt accgttatta gtacaaacaa ttggtgatgg agaacaattt 2041 gttgttttaa aagtgttgga aatttttaat atgtttgtta aagaacgact catcaatccg 2101 agaaccgagt ttaatgcatt ggatgtgtat aaggagctat tattaaacag tataaactta 2161 ttgttacatc cgaatgagtg gattcgacaa tcagtgataa acctcataat atctgtgagt 2221 gctaatttga ctgatgctga caaatattgt tttttgtatc cattgattaa acgatttttg 2281 agttatgatt tgtctatcat tgattggaac acattatatc catgtttaac taaaccatta 2341 accaagcaaa tttatgattt agccatcact tggtcattaa attcaacgtc taaatcattg 2401 ttctggcaac aaaagaattt ttcaatgtta acaactaagc agtcagggaa caacatcacc 2461 aaaaagatga aaaaaatgat ttcttttaat aaagatatgg gtaaatctgt ttatttacca 2521 caaatgatgt cagaattaac tttcgccaat ggatcaaacc aaaaaagtaa tctgacaatt 2581 cctttatcgc tggaagataa acaatggtta ttaaaattga aatcaattgg tttagatgat 2641 aaatcacttt ggaaaattct tgcattaaga gattacattt atcatgtggg tcgatctcct 2701 acttccacgt taaataaacg attgaaagca actactaatg agatactgat tttaccacgg 2761 aatatatttt tcaccgtagt atatcgatca gaaccactat cgatatctaa tggaactcga 2821 gaagaaagaa ttcttggaag taatgccgag gaaactgtat ctataagaac ttcttctcgt 2881 agaggttcta attcattaat attacctcaa ttagaaagag ttacagcatc ggttcaaacc 2941 gtcgaggcaa atattatggg tgaaatggaa acgcataatt caggagtgaa taaagatggt 3001 tggtttaatg attcaaacac ttcacataaa gtgtttagtg ttagtaattc gaaaattatc 3061 gtctcacata tcaaacatac gtatactgga gagaatccgt atatattgaa ttttttaaag 3121 aatcctaaat ttcaacctaa tttgtcagat tttgaagaat ttgggaaaac aataattaaa 3181 catcaatacc tgcaacagca acagcaacaa caaaatcaga atcaacaaca gctaaaaact 3241 attgacatgt taccacctat gaatgttttg gtggcaagtt ttagatcttc agacaaagat 3301 aatagattag aagagatcaa tgcattagct gtttgtccaa catcagaatt ttttgttact 3361 ggatcatcaa caggaagttt gaaagtttgg gatagtttaa aaatggaaaa attagtcaca 3421 gttaaaaatg ccaatttatc aattgaatta aattcaagtg tttgttcaat tacattttta 3481 cctaatagat ttgttgttat tgtgactact aatgatggaa ccattcgatt attcagaata 3541 gatgttatga gaaatagtaa gagtaaaaaa attgttcgat atttgaaaat gcatttgatt 3601 cgaaaatata tacacggtaa tgatcatgat gggagtggga attgtaatgg caccaagaaa 3661 tatcatcgtc ctattgaaca aatcaaattt ttacaagata attatattat aggggttgat 3721 gctacagaac agaaaattat catgttagat ataatcacca tgacaatcct gtctgaatta 3781 caacatccat taatttatgg gataattaat acatttattg tatataaaga ttattggtta 3841 ttagtgggga ccgataaagg ggtgttaact ttatgggatt tacgatttaa aatcattgtt 3901 aaatcttggc atgtcaaaaa taatgaaaat aatgaaagac ttggttctat taataattta 3961 gaattattat ctaattcaat taaattattt gagacaaaga atgacggtgg tagtagtggt 4021 ggtagtagta gtgcttattt tgccttgagt ggtaatgatg atattagtat ttgggaatta 4081 ccaagtttag aatgtaaggc gattttaaaa acaagtaatg ccgttatgaa ttcaagtacc 4141 attatgaaat attcattgat tgaatataaa gatgatggta atgaagatga acttttcatt 4201 gaagaaataa tcgatgatat tgaacttgac attgatcatg aatatgatcg gaaattgaat 4261 ttaaatgttt taacaatgaa atttttccaa ttcaatacta ataataataa taataatgtg 4321 gattatttaa tgtgttcaac cggtagtaat cgagtgatat tatttaattt gacatcaatt 4381 caagattctg tggtattgaa atctgacaat acaatattta acactcgtta ttataataat 4441 gtggttataa ttgatcctgt atttgccaat gatcaaacat tgctaaatgg aactactaaa 4501 actaatatgt acaatgttgt taagttggtt gatcatttat ttgaaccatt ccatatgatt 4561 attaccattg ataggaataa ttgtgtcaaa ttatataaag ctgctaactg ttag