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LOCUS XM_709237 1098 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_709237 VERSION XM_709237.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1098) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1098) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1098) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1098) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1098) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1098) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1098 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1098 /gene="CIC1" /locus_tag="CAALFM_C601170WA" /db_xref="GeneID:3644059" CDS 1..1098 /gene="CIC1" /locus_tag="CAALFM_C601170WA" /note="Putative proteasome-interacting protein; rat catheter biofilm induced" /codon_start=1 /transl_table=12 /product="Cic1p" /protein_id="XP_714330.1" /db_xref="CGD:CAL0000187983" /db_xref="GeneID:3644059" /translation="MAKTRSKSAATAAATSPKASPTAAKVTKNKVTKPSTASPSKTTK TKAVKKTTTKKATPKKEEEEKKEVHVETVTKDSSLIPEEITEKAISELKKYISRQSQQ QQETENDESKKSKLFDEDEDDEDNKQNESFYLTIDSKKFWSSKPQFKPKSFKLTKPLY DNNQTTTTTSNSNNDINVDNNICLIIRDKLVKSIDELNELENNQSLSQITQIIPLNSI KTEYKSFEKKRELYHQFKIFLVDEAILNIMPNTLGKVFYSKGSSNDKIPIPIKVTSTT TGSQTNGKQLSIVTLTNQLNKVLNNTYYLPPIGNNITIKIGKLKFDNNDLIANINDVV KNLDLDTIKSIHVKTSTSPAIPLFYTKSLSQ" misc_feature 376..1071 /gene="CIC1" /locus_tag="CAALFM_C601170WA" /note="Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403" /db_xref="CDD:238235" misc_feature order(376..384,391..393,397..399,403..405,409..411, 925..927,931..933,937..939,1051..1056,1060..1062) /gene="CIC1" /locus_tag="CAALFM_C601170WA" /note="mRNA/rRNA interface [nucleotide binding]; other site" /db_xref="CDD:238235" ORIGIN 1 atggctaaaa caagatctaa atctgctgct actgctgctg caacttctcc taaggcttct 61 ccaactgcag ctaaagtaac taaaaataaa gttaccaaac catcaacagc atcaccatca 121 aaaaccacca agactaaagc agtaaaaaaa actaccacca aaaaggccac acctaagaaa 181 gaagaggagg aaaaaaaaga agtacatgtg gaaactgtta caaaggattc aagtttgatt 241 cctgaagaaa tcaccgaaaa ggcaattagt gaattgaaaa aatatatatc tagacaatcc 301 caacaacaac aagaaacaga aaatgatgaa tctaaaaaat cgaaattgtt tgatgaagat 361 gaggatgatg aagacaataa acaaaatgaa tccttctact tgaccataga ttctaaaaaa 421 ttctggtctt ctaaacctca attcaaacca aaatcattca aattgaccaa accattatat 481 gataataacc agaccaccac aactactagc aacagtaata atgatataaa tgttgataac 541 aatatatgtt taattattcg tgataaatta gttaaatcaa ttgatgaatt aaatgaatta 601 gaaaataatc aatcattatc acaaattact caaataattc cattgaattc aattaaaact 661 gaatataaat catttgaaaa aaaacgagaa ttatatcacc aatttaaaat ttttttagtc 721 gatgaagcta tattaaatat tatgccaaat actttaggta aagtatttta ttcaaaaggt 781 tcatccaatg ataaaatccc tatccccatt aaagttacat ctactactac agggtcacaa 841 accaatggta aacaattatc aatagttact ttaactaatc aattaaataa agtattgaat 901 aatacttatt atttaccacc aattggtaat aatattacta ttaaaattgg gaaattgaaa 961 tttgataata atgatttaat tgctaatatt aatgatgttg tgaaaaattt agatttagat 1021 actattaaat caattcatgt gaaaacttca acttctccag caatcccatt gttttataca 1081 aaatcccttt cacaataa