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LOCUS XM_709223 2496 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_709223 VERSION XM_709223.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2496) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2496) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2496) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2496) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2496) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2496) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_709223.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2496 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2496 /locus_tag="CAALFM_C601040CA" /db_xref="GeneID:3644014" CDS 1..2496 /locus_tag="CAALFM_C601040CA" /note="DEAH-box ATP-dependent RNA helicase, required for 18S rRNA synthesis; rat catheter biofilm induced" /codon_start=1 /transl_table=12 /product="RNA helicase" /protein_id="XP_714316.2" /db_xref="CGD:CAL0000190791" /db_xref="GeneID:3644014" /translation="MTDQIKGDEHNQVNGSKKRKRKRNKNKKNDNNTPVETSEPIPTP VYEDDIHRQNKKFKFNEEGEMEKPQESPEEQLELVADQGEPCTEEPLPQHEGFEEIEV TDDIDETEEPENLPTRTQQEKHQHGKNKFKQKLEFKRKTVVYKDQDDEDDEEENNTFN FSQNSFQLAATAQQLLQIREKLPIYHHKDKIIECINNNQVTIVIGETGSGKSTQIPQF LMPENPKMIGVTQPRRVAAASLAARVSEEYGCKLGQDVGYQVRFTNMTNRQTKLKYLT DGMLLREIMLDSNLTKYSTIILDEAHERTILTDLIMGFLKQIITSGKRKDLKIVVMSA TLNAELFSNFFDNAPILYIEGKMYPVSQFYLDAESEDIVDTMIRSIIQINLNEPEGDI LCFLPGQEEIDNCVKSLEQLAPQLPREAPLIVPLPLYAALSPGQQSKIFEKLPKGRRK VILATNIAETSITVSGVKYVIDSGLRKIKVWKHNLGLSTLLTTPISQASARQRAGRAG RESEGKVFRLYPESTYMALPKQQESEIKRNDIILPVLTLKKLGVDDLLNWSWLEYPGQ DAILSALNTLYTLGALNDSGKVTTLGYKMSILPLPPQLSVVLITAAEFGVLSPVIDIA SCLSVDNLITNVTGEARDEINFKRRQHCPLGNIHGDLIALYEYFQAYQAQGKEWCKEL AFSFKGFKNVEKIKYQLQEYMMTTIKQDDSLTNAEKDKQLAKLRAQLDNEETDRQLDI PSILKSFLKGYITNTAVGMPDRSFRTFNTGQLISVHPSSTLFGKPNMDAIMYIEYVFT TKGYARNVSAIELSWLQEIAPHVIGGVKVNIND" misc_feature 523..>2466 /locus_tag="CAALFM_C601040CA" /note="HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; Region: HrpA; COG1643" /db_xref="CDD:441249" ORIGIN 1 atgacagatc agattaaagg ggatgaacat aaccaagtaa atggtagtaa aaaaagaaag 61 agaaagagaa ataagaacaa gaaaaatgac aacaacacac cagtagagac ttccgaacca 121 ataccgacac ctgtttatga agatgatatc catcgacaaa ataaaaagtt caaattcaat 181 gaggaagggg aaatggagaa acctcaagag tcacctgaag aacaactaga attagtggca 241 gatcaagggg aaccttgcac tgaagaacct ttaccacaac atgaaggttt cgaagagatt 301 gaagtaactg acgacataga tgaaacagaa gaaccagaga atcttccaac aaggactcaa 361 caagaaaaac atcaacacgg taagaataaa tttaaacaaa agcttgaatt caaaagaaaa 421 accgttgtat ataaagatca agatgatgaa gacgatgagg aagaaaataa tactttcaat 481 ttttcacaaa attcgtttca acttgcagcc accgcccaac aattgttaca aattagagag 541 aaattgccca tttatcatca taaggataaa atcattgaat gcattaataa taatcaagtc 601 actatcgtca ttggtgaaac cggttcaggt aaatcaacac aaatccctca atttttaatg 661 ccagaaaacc caaaaatgat tggcgtgaca caaccaagaa gagttgccgc tgcttcttta 721 gcagcaagag taagtgaaga atatggatgt aaattaggtc aagatgttgg gtatcaagtt 781 agattcacta atatgactaa cagacaaaca aaattgaaat atttaactga tggtatgctt 841 ctacgagaaa tcatgcttga tctgaatttg actaaatatt caacaattat cctagatgaa 901 gcgcatgaaa gaactatttt gactgattta atcatggggt ttttgaaaca aattattact 961 tctggtaaaa gaaaagattt gaaaatcgta gttatgagtg ctactttgaa tgccgaatta 1021 tttagtaatt tctttgataa tgctcctatt ttatacattg aaggtaaaat gtatccagtt 1081 tcacaattct acttagatgc tgaatctgaa gatattgtgg ataccatgat cagaagtata 1141 attcaaatca atcttaatga acccgagggg gatattcttt gcttcttacc tgggcaagag 1201 gaaattgata attgtgttaa aagtttagaa caattagcac ctcaactacc tagggaggca 1261 ccattgattg ttcctttacc tttatatgca gctttatcac ctggccaaca atctaaaata 1321 ttcgaaaaat tacccaaggg aagaagaaaa gtgattttgg cgacaaatat tgctgaaaca 1381 tccattactg tttctggtgt taaatatgtt atagattccg gattaaggaa aattaaagtt 1441 tggaaacata atttaggact ttctacatta ttgactaccc ctatttcaca agcttcagca 1501 agacaaagag ccgggagagc aggtagagaa tctgaaggta aagtattcag attatatcct 1561 gaatctactt atatggcact tccaaaacaa caagaatctg aaattaaaag aaatgatatt 1621 attttaccag ttttgacatt gaaaaaatta ggtgttgatg atttacttaa ttggagttgg 1681 ttagaatacc caggacaaga cgccattttg agtgcattaa atacattgta tacgttgggt 1741 gcattgaacg attcagggaa agtaactaca ttgggttata aaatgtctat tttaccactt 1801 cctccacaat tatcagtagt attaataact gctgcagaat tcggtgtgtt atcaccggtt 1861 attgatattg catcatgtct ttcagtcgat aatttgatta ctaatgtcac tggtgaagcc 1921 agagatgaaa tcaatttcaa aagaagacaa cattgtccct tgggaaatat ccatggtgat 1981 ttgattgcct tatatgaata tttccaagca tatcaagctc aaggtaaaga atggtgtaaa 2041 gaattagcat ttagtttcaa aggtttcaaa aatgtggaaa aaatcaaata tcaattacag 2101 gaatatatga tgactactat taaacaagat gattcattaa ccaatgctga aaaggataaa 2161 caattggcaa aactcagggc acaattagat aatgaagaaa ctgatagaca attggatatt 2221 ccttcaatcc tcaaatcgtt tctcaaaggt tatatcacaa acactgcagt tggtatgcca 2281 gatagatcat ttagaacatt caatactggt caattgattt ctgtccatcc ctcgtctact 2341 ttattcggga aaccaaatat ggatgccatt atgtatatag aatatgtgtt taccacaaaa 2401 ggttatgccc gtaatgtctc agctattgaa ttatcatggt tacaagaaat cgcccctcat 2461 gtcattggtg gtgttaaagt taatattaat gattaa