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LOCUS XM_709217 1041 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_709217 VERSION XM_709217.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1041) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1041) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1041) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1041) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1041) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1041) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_709217.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1041 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1041 /gene="RIM9" /locus_tag="CAALFM_C600990WA" /db_xref="GeneID:3644047" CDS 1..1041 /gene="RIM9" /locus_tag="CAALFM_C600990WA" /note="Protein required for alkaline pH response via the Rim101 signaling pathway; ortholog of S. cerevisiae Rim9 and A. nidulans palI; Spider biofilm induced" /codon_start=1 /transl_table=12 /product="Rim9p" /protein_id="XP_714310.2" /db_xref="CGD:CAL0000199348" /db_xref="GeneID:3644047" /translation="MFKAFIALLILLIVCWVIQLLPVIAVPFTTPDANIYLSYYNNYK FGVFGICNVERHICSKPSIGYPSTNSTFYAYDNDESFGTGGIVLPSDVRYTISKLLVV HVVAFCFSSLLLIVIFGLIIILFFKYIKTKKDLEGIQLNDSSHEITIHSDEEDNNNNN IDNTNHNNKRASVTINKTIFDLTPFLNLMLVFTFFSVLTTLLAFLADILLFTPNLSYL GWLQLIPIVSMALVTSMLCFIKRSISSRKFFESEYRYANDDMRIMRKTYVDEFWNDNA SDDGFYVYTDGFYTRNGDNVQQPTSNTAGSLLSEHHDVSIVEPRTFLDTDDSRRGSSP HEFIELQNLRPV" misc_feature 16..>354 /gene="RIM9" /locus_tag="CAALFM_C600990WA" /note="SUR7/PalI family; Region: SUR7; pfam06687" /db_xref="CDD:399580" ORIGIN 1 atgttcaaag catttatagc attattaata ttgttaattg tgtgctgggt aatacagcta 61 ctaccagtaa tagcggttcc cttcacgaca cctgatgcaa acatctattt atcatattat 121 aacaattaca aatttggagt atttgggata tgtaatgttg aacgacatat atgctcaaaa 181 ccaagtattg gatatccttc cactaatagc acattttatg catatgacaa cgatgaatct 241 tttggaactg gtggtattgt cttgccatca gatgtacgat atacaatttc caagttatta 301 gtggttcatg ttgttgcctt ttgcttttcg agcttattgt tgatagttat ttttgggcta 361 atcataatac tatttttcaa atacattaag actaagaagg acctagaagg tatacaactc 421 aacgatagtc tgcatgaaat aaccatacac tctgacgaag aagataacaa caacaacaac 481 attgacaata caaatcataa taacaaaagg gcaagcgtaa ccattaataa aacaatattt 541 gatttaactc cttttttaaa tctaatgtta gtgtttactt ttttttcagt gttaactacg 601 ttgttggctt ttttagctga tattttattg tttaccccga acttgtcata ccttggatgg 661 cttcaattaa taccgattgt gctgatggct ttagtcacat cgatgttgtg tttcatcaag 721 cgatcaattt cttcaagaaa gttttttgaa agtgaatatc gatatgctaa tgatgatatg 781 agaataatga gaaaaactta tgttgatgag ttttggaacg ataatgccag tgacgatgga 841 ttctatgttt acacagatgg attttacact agaaatggcg acaatgtcca gcaacctact 901 tccaatacag ctggatcact actatctgag caccacgatg tcagcattgt agaaccaaga 961 actttccttg acactgatga ttctagacgt ggaagcagtc cacatgagtt catagaatta 1021 caaaatttac gaccagtata a