Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_709213 1716 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_709213 VERSION XM_709213.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1716) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1716) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1716) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1716) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1716) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1716) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1716 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1716 /gene="CAN1" /locus_tag="CAALFM_C600960WA" /db_xref="GeneID:3644035" CDS 1..1716 /gene="CAN1" /locus_tag="CAALFM_C600960WA" /note="Basic amino acid permease; complements lysine transport mutation; 10 predicted transmembrane regions, 3 predicted N-glycosylation sites; phagocytosis by macrophages induces transcript; rat catheter, Spider and flow model biofilm induced" /codon_start=1 /transl_table=12 /product="Can1p" /protein_id="XP_714306.1" /db_xref="CGD:CAL0000201116" /db_xref="GeneID:3644035" /translation="MPEDYEKYRMGSSNESHQKSVQPISSSISKSNKKTKHQTDFVQD SDIIEASSINDEFGEVKRDLKARHVSMIAIGGTIGTGLFISTGSLLHTTGPVMSLISF LFVTTICFSVTQSLGEMATYIPISGSFAQFVTRWVSKSCGAANGWLYWFSWAVTFGLE LSVVGQVIQFWTDAVPLAAWISIFFVILTIFNFFPVKFYGEVEFWIASIKIIAVFGWI IYAFIMVCGAGKTGPVGFRYWRNGYAWGDGILVNNNGKYVAAFVSGLINSIFTFQGTE LVAVTAGEASPRALRSAIRKVMFRILVFYVLCMLFMGLLVPYNDPKLTQDGGFTRNSP FLIAMENSGTKVLPHIFNAVIVTTIISAGNSNIYSGSRILYGLAQAGVAPKFFLRTNK GGVPFFAVAFTAAFGALGYLACSSQGNKAFTWLLNITATAGLISWGFISVSHIRFMKT LQRRGISRDTLPFKAFFMPFSAYYGMVVCFIVVLIQGFTVFWDFNASDFFTAYISVIL FVVLWVGFHFFFYGFGKDSFKMSNILVPLDECDIDSGVRDINDAEFDIPPPKNAWDKF WAIVA" misc_feature 181..1629 /gene="CAN1" /locus_tag="CAALFM_C600960WA" /note="Amino acid permease; Region: AA_permease_2; cl45918" /db_xref="CDD:459263" ORIGIN 1 atgccagaag attatgagaa atatagaatg ggtagttcaa atgaatccca tcaaaaactg 61 gtacaaccaa tatcatcatc aatcagtaaa tcaaacaaaa aaactaaaca tcaaactgat 121 tttgttcaag attcagatat aatagaagct tcaagtataa atgatgaatt tggtgaagtc 181 aaaagagatt taaaagccag acacgtttct atgattgcca ttggtggtac tataggtaca 241 gggttattta tatctacagg ttcattactt cataccactg gtccagtaat gtcattaatt 301 tcatttttat tcgtcacaac aatttgtttt tccgtcacac aatctcttgg tgaaatggct 361 acttacatcc ctatttctgg ttcttttgct caattcgtca ctcgttgggt ctccaagagt 421 tgtggtgctg ctaatggttg gttatattgg ttctcatggg ctgtcacttt tggtttagaa 481 ttatctgttg ttggtcaagt tattcaattc tggactgatg ccgtgccctt agcagcttgg 541 atttctatat ttttcgttat tttgacaatt ttcaattttt tccctgtgaa attttatggg 601 gaagtggaat tttggattgc ttcgattaaa attattgccg ttttcggttg gatcatttat 661 gctttcatca tggtttgtgg tgctggtaaa accggtcctg tcggattccg ttattggaga 721 aacggttatg cttggggtga tggtatttta gttaacaata atggtaaata tgttgctgca 781 tttgttagtg ggcttattaa ctccattttc actttccaag gtactgaatt agttgctgtt 841 accgccggtg aagcttctcc aagagctctt agaagtgcta ttagaaaagt tatgttcaga 901 attttggtat tctacgtttt gtgtatgctt ttcatgggtc ttttagtgcc ttacaacgat 961 ccaaaactta ctcaagatgg tggttttaca agaaattctc cattccttat tgctatggaa 1021 aattccggta ctaaagtctt accacacatt ttcaatgccg tcattgtcac aaccattatc 1081 tcagctggta actcaaacat ctattctgga tcacgtatcc tctatggttt agctcaagct 1141 ggtgttgctc ctaaattttt ccttagaacc aataaaggtg gtgttccatt ctttgccgtt 1201 gcctttactg ctgcatttgg tgcattaggt tacttggcct gttccagtca aggtaacaaa 1261 gctttcactt ggcttttgaa tattactgca accgcagggt taatctcatg gggattcatt 1321 tccgtaagtc acattagatt tatgaaaact cttcaaagaa ggggtatcag cagagatacc 1381 ctacctttca aagctttctt tatgccattt agtgcttact atggtatggt tgtttgtttc 1441 attgtggttt taattcaagg ttttaccgtg ttttgggatt tcaatgctag tgattttttc 1501 actgcttata tttctgttat attattcgtt gttctttggg ttggattcca ctttttcttt 1561 tatggattcg ggaaagattc ttttaaaatg agcaatattt tggttccatt ggatgaatgt 1621 gatattgatt ctggtgttag agatattaat gatgcagaat ttgatattcc accaccaaag 1681 aatgcatggg ataaattctg ggctattgtt gcataa