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LOCUS XM_707427 1668 bp mRNA linear PLN 18-APR-2022 (CAALFM_C602380WA), partial mRNA. ACCESSION XM_707427 VERSION XM_707427.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1668) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1668) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1668) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1668) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1668) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1668) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707427.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1668 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1668 /locus_tag="CAALFM_C602380WA" /db_xref="GeneID:3645883" CDS 1..1668 /locus_tag="CAALFM_C602380WA" /note="Putative mitochondrial ATP-dependent RNA helicase of the DEAD-box family, transcription is activated in the presence of elevated CO2" /codon_start=1 /transl_table=12 /product="ATP-dependent RNA helicase" /protein_id="XP_712520.2" /db_xref="CGD:CAL0000186407" /db_xref="GeneID:3645883" /translation="MFKLLIPNKYNYVIRPLVRFKSIKSPKSPKPKPTAKLSPNVFSS GKFSQLHNDTSTTNIESKITSFDQLKIFPSVREAMIKEIKSQYNLKGPRHSNIDEIDI KPTPVQIAAIRKINQTRKLKVPNKDLEGMDDAERIQFELQNANEIQKTKVFTVAAETG SGKTWSYLAPLLSKLKSDDMEFWKSDPEGYDNTRKKGQFVKSVILLPTNELVDQVYET LQRANSFELDHKGAPGNFTSFLELPENKTMNITTMKLGQGEAPVRLFRQLETKGPIDV LITTPGKIVAFSKLVNINRPFRVFANVKYCVLDEADTLFDDSFEKNTTDVITHFPKLL DLILVSATIPKVFEKKLSKLFPDQRSLIRVATPSLHKVPRNIKVMTIDADVAPYNGSK PRCLAQALYAISKDGTEPGYVKRIIVFVNEKSEVDGIVESMITKYKVRPEDIVGVSGS VNIRDRKDMLQPFLQPAELIENDDFGSKVKILVTTDLLARGLNFQGVKNVILLGLPRN SVDLVHRLGRTGRMNQNGRVFVIVDKKSKKSWVKGLGNAIIRGLRIG" misc_feature 196..1113 /locus_tag="CAALFM_C602380WA" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(475..495,925..927) /locus_tag="CAALFM_C602380WA" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350723" misc_feature 1225..1596 /locus_tag="CAALFM_C602380WA" /note="C-terminal helicase domain of the DEAD box helicases; Region: SF2_C_DEAD; cd18787" /db_xref="CDD:350174" misc_feature order(1471..1473,1477..1479,1552..1554,1561..1566) /locus_tag="CAALFM_C602380WA" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350174" ORIGIN 1 atgttcaaat tactaatacc gaataagtat aattacgtga tacgaccatt ggtacggttt 61 aaatctataa aatcaccaaa atcaccaaaa ccaaaaccaa ctgcaaaact cagtccaaat 121 gtgttttctc tgggtaaatt ttctcaacta cataatgaca ccagcactac taatattgaa 181 tcaaaaataa ctagttttga tcaattgaag attttccctt cggttagaga agccatgatt 241 aaagaaatca aatctcaata caatttaaaa ggtccacgac attctaatat tgatgaaatt 301 gatatcaaac caactcccgt ccaaattgct gctattcgga aaattaacca aaccaggaaa 361 cttaaagtgc ccaataaaga tttagaaggt atggatgatg ctgaacgtat tcaatttgaa 421 ttacaaaatg ctaatgaaat acagaaaact aaagtattca ccgttgctgc tgaaactgga 481 tcaggtaaga cttggtcata tttagctcca ttattgagta aattaaaact ggatgatatg 541 gaattctgga aatctgatcc agaaggttat gataatacga ggaaaaaagg tcaatttgtt 601 aaatcagtca tacttttacc gacaaatgaa ttagttgatc aagtttatga aacattacaa 661 cgagccaatt catttgaatt ggatcataaa ggtgcccctg gtaatttcac actgttttta 721 gaattgccag aaaataaaac tatgaatatt actaccatga aattgggaca aggcgaagca 781 ccagtaagat tatttcgtca attagaaact aaaggtccaa ttgatgtttt aataacaact 841 cctggtaaaa ttgttgcctt ttctaaattg gtcaatatca atcgtccatt tagagttttc 901 gctaatgtga aatattgtgt tttagatgaa gctgatacat tatttgatga ttcatttgag 961 aaaaacacta ctgatgtcat tactcatttc cctaaattgc ttgatttaat tttggtttca 1021 gcaactatcc ctaaagtatt tgagaaaaaa ttatcgaaat tatttcctga tcaacgttca 1081 ttaattagag ttgctactcc tctgttacat aaagttccac gtaacatcaa agtaatgact 1141 attgatgctg atgttgctcc ttataatgga tccaaaccta gatgtttagc acaagctctt 1201 tatgccatat ctaaagatgg aactgaacca ggttacgtca aaagaattat tgttttcgtc 1261 aatgagaaat ctgaagttga tgggattgtt gaatcaatga ttacaaaata taaagtaaga 1321 ccagaagata ttgttggagt ttccgggtcg gttaatatca gagatcggaa agatatgtta 1381 caaccatttt tacaaccggc agaattgatt gaaaatgatg attttggtag taaagtgaaa 1441 atattggtca ctactgattt attagctcga ggattaaatt tccaaggagt gaaaaatgtc 1501 atattattag gattaccgag aaattccgtt gatttggttc atagattagg tcgaactggt 1561 cgaatgaatc aaaatggaag agtttttgtc attgttgata aaaaatctaa gaaatcttgg 1621 gtaaaaggat taggcaatgc aattattcga ggacttcgaa ttggttaa