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LOCUS XM_707417 2382 bp mRNA linear PLN 18-APR-2022 (CAALFM_C602290CA), partial mRNA. ACCESSION XM_707417 VERSION XM_707417.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2382) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2382) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2382) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2382) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2382) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2382) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707417.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2382 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2382 /locus_tag="CAALFM_C602290CA" /db_xref="GeneID:3645873" CDS 1..2382 /locus_tag="CAALFM_C602290CA" /note="Putative flavodoxin; similar to S. cerevisiae Tyw1, an iron-sulfur protein required for synthesis of wybutosine modified tRNA; predicted Kex2p substrate; Spider biofilm induced" /codon_start=1 /transl_table=12 /product="putative tRNA 4-demethylwyosine synthase" /protein_id="XP_712510.2" /db_xref="CGD:CAL0000201526" /db_xref="GeneID:3645873" /translation="MGFGQILLFACSILYLSTGGRWTVVALVFVLYILYNKDQQQQQQ PPQPQQQQQQQQQQQQQQQPPQPQQLKPSVPPLAKPKKESPIYAVDFTFSSKAFTPST TTTFPIRRVIAPRPKRSPKIFTASKPIVQQQQQQQQRQPVLTKTTVELKKCQIYIFYT TLTGSSQRIAKSLYEKLQNLENLELEPKLLSLDDDVDDLEEYFLNVPTQNDNNCIYLL VLPSYETDSPIDYFLEHLIDTAQDFRIDKYPLRKLIGFSVLGLGDSESWSHDNKFCYQ AKLADKWLGKLGARRLYPLGEICMKYEGEPKAQEWIQNFASLIVNNDNEPFYIDDNNN DDDIDDSDAEESEGSDDADTLVDVEDMGDIIRKSGKATTIGGGGIETKEMVAKDSPTF KSLTKQGYTIVGSHSGVKICRWTKSALRGRGSCYKFAFYGIKSHLCMETTPSLACSNK CVFCWRHGTNPVAKSNWRWEVDPPEKVMAGALEGHYQKIKQLRGVPGIQMDRFEEAFK VRHCALSLVGEPIFYPYINEFVGMLHEQHISSFLVCNAQHPDSLAKLTKVTQLYVSID APTKKDLKKVDRPLNSDFWERLMSCLDILRTIQSHQRTVFRLTLVKGFNMEDIESYAD MVERAKPSQIEIKGATFCGSSNGNGNPLTMQNIPFYEECKNFVENLNKELQSRGLDYD IAAEHAHSCCILVADKKFMINGKWHTHIDYPKFFELLESGKEFVDLDYVKETPEWAVW GSQGAGFNPEDTKYDRKAEKLKKKAIRDEQAKKLVEQQQQQQQQQQETVQAKR" misc_feature 469..903 /locus_tag="CAALFM_C602290CA" /note="Region: Flavodoxin_1; pfam00258" /db_xref="CDD:425562" misc_feature 1174..2070 /locus_tag="CAALFM_C602290CA" /note="wyosine biosynthesis protein TYW1; Region: rSAM_TYW1; TIGR03972" /db_xref="CDD:274890" ORIGIN 1 atgggatttg gacaaatttt actttttgca tgctcaatac tatacttgag taccggtgga 61 agatggacgg ttgtagcact tgtatttgtt ttatatattt tatacaacaa agatcaacaa 121 caacaacaac aaccaccaca accacaacaa caacaacaac aacaacaaca acaacaacaa 181 caacaacaac caccacaacc acaacaactt aaaccatctg ttcctccact agcaaaacca 241 aagaaagaat cacctattta tgcggttgat tttactttca gttcaaaagc attcactcca 301 tcaactacga caacttttcc tatacgaaga gtgatagctc ctcgaccaaa aagatcacct 361 aaaattttca cagcatcaaa acctattgtt caacaacaac aacaacaaca acaacgtcag 421 ccagtattga cgaaaaccac cgtcgaattg aaaaaatgtc aaatatatat tttttatacc 481 accttaactg gatcatcaca aagaatagct aaatccttat atgaaaaatt acagaatctt 541 gaaaaccttg aacttgaacc taaattatta agtcttgatg atgatgttga tgatttagaa 601 gaatatttct taaacgtacc aacccaaaat gataataatt gtatttattt attggtatta 661 ccatcatatg aaaccgattc acccattgat tattttttag aacatttaat cgataccgct 721 caagatttcc gtattgataa atatccatta aggaaattaa ttggatttag tgtattaggt 781 cttggagatt ctgaatcttg gtctcatgat aataaatttt gttatcaagc gaaattagct 841 gataaatggt taggtaaatt gggtgcaaga agattatatc ccttgggtga aatatgtatg 901 aaatatgagg gggaaccaaa agctcaagaa tggatacaaa attttgcttc attgatagtt 961 aataatgata atgaaccatt ttatattgat gacaataata atgatgatga tatagatgat 1021 agtgatgccg aggaaagtga ggggagtgat gatgctgata ctttggttga tgtggaagat 1081 atgggagata ttattcgtaa atcagggaaa gctactacta ttggtggtgg tggtatagaa 1141 actaaagaaa tggtagctaa agattctcca acttttaaat cattaacaaa acaaggatat 1201 actatagttg gatcacattc tggagttaaa atatgtcgtt ggactaaaag tgcccttaga 1261 ggaagaggat catgttataa atttgccttt tatggtatta aatctcattt atgtatggaa 1321 actactccat ctttggcatg ctctaataaa tgtgtttttt gttggagaca tggtaccaac 1381 cccgtggcta aactgaattg gagatgggaa gttgatccac cagaaaaagt catggcgggt 1441 gccttggaag gtcattatca aaaaattaaa caattaagag gtgtaccagg aattcaaatg 1501 gatagatttg aagaagcttt taaagttcgt cattgtgctt tatctttggt tggtgaaccg 1561 attttttatc cttatattaa tgaatttgtt gggatgttac atgaacaaca tatttcatca 1621 tttttagtat gtaatgctca acatccagat tcattagcaa aattgactaa agttacacaa 1681 ttatatgtta gtattgatgc tccaactaaa aaagatttga aaaaagttga tcgtccttta 1741 aatagtgatt tttgggaaag attaatgtca tgtttagata tattacgtac tattcaatct 1801 catcaacgta cagttttccg attaacttta gttaaaggat ttaatatgga agatattgaa 1861 agttatgctg atatggtaga aagagctaaa ccatcacaaa ttgaaattaa gggggcaaca 1921 ttttgtggat cttcaaatgg gaatggtaat ccattaacaa tgcaaaacat tccattttat 1981 gaagaatgta aaaattttgt tgaaaattta aataaagaat tacaatcaag aggtttagat 2041 tatgatattg ctgctgaaca tgctcattca tgttgtatat tagttgctga taaaaaattc 2101 atgattaatg gtaaatggca tactcatatt gattatccaa aattttttga attacttgaa 2161 agtggtaaag aatttgttga tttagattat gttaaagaaa ctcctgaatg ggctgtttgg 2221 ggatcacaag gggcaggatt taatcctgaa gatactaaat atgatagaaa agctgaaaaa 2281 ttgaaaaaga aagctataag agatgaacaa gcaaaaaaat tagttgaaca gcaacaacaa 2341 caacaacaac aacagcaaga aactgtacaa gcaaaaagat aa