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LOCUS XM_707410 2055 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_707410 VERSION XM_707410.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2055) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2055) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2055) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2055) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2055) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2055) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2055 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2055 /locus_tag="CAALFM_C602230WA" /db_xref="GeneID:3645866" CDS 1..2055 /locus_tag="CAALFM_C602230WA" /note="Putative GTPase; role in 60S ribosomal subunit biogenesis; Spider biofilm induced" /codon_start=1 /transl_table=12 /product="putative GTPase" /protein_id="XP_712503.1" /db_xref="CGD:CAL0000183488" /db_xref="GeneID:3645866" /translation="MENSNKISLHPEQKKWKAPKGPKPIHHKNKNLIGLGRTIANQRS KENSIQYLPDGEMRFTTDKKEANWVKLRSVTQENALDEFLSTAELADTDFTADKNQQV KIIKVGNTSIVNSNGLLSTDEMLAMRQKHMMFENKLTIPKRPKWNKNQSKIEIDRQEN LAFLSWRRELAQLTENNDLLLTPFERNLEVWKQLWRVVERCDLIVQIVDARNPLFFRS IDLDKYVTSLSDPDNNKAKNNLLLVNKADMLTRDQRIAWAEYFKLKKINYVFFSAAKA NELLEKEREELENIQNSTGSSSSSSRNTNNNAAAAAVDAEQEEGEANDSIRILKIEEL EKLFMDSAPKFEVDPEFPDRKLQIGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKH FQTIHLSPDVLLCDCPGLVFPNFAYTNAELVCNGVLPIDQLREHIPPVSLVCQRIPKF FLEAVYGIHIPIQKVEDGGNGEYPTARELLNAYARARGYMTQGFGSADEPRAARYILK DYVNGKLLYVNPPPKEATNKNEWILPNLQESRIFNRELYTLNHLPESRQHQIVSAMQH KHIPVDEFNLEKDLTKLNFSQHIAAITGSGDSKDEDNKLRDNNQSQSEAKTLFYGGKQ AALESAGDELDREFFAMNNISGKFATPFHKKNNSNTEKNSNKKHNKKNKKQDKKVRVV GY" misc_feature 568..1239 /locus_tag="CAALFM_C602230WA" /note="A circularly permuted subfamily of the Ras GTPases; Region: HSR1_MMR1; cd01857" /db_xref="CDD:206750" misc_feature 604..1545 /locus_tag="CAALFM_C602230WA" /note="Ribosome biogenesis GTPase RbgA [Translation, ribosomal structure and biogenesis]; Region: RbgA; COG1161" /db_xref="CDD:440775" misc_feature order(730..735,739..744,814..822,1090..1110,1225..1227) /locus_tag="CAALFM_C602230WA" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206750" misc_feature 730..741 /locus_tag="CAALFM_C602230WA" /note="G4 box; other site" /db_xref="CDD:206750" misc_feature 814..822 /locus_tag="CAALFM_C602230WA" /note="G5 box; other site" /db_xref="CDD:206750" misc_feature 1084..1107 /locus_tag="CAALFM_C602230WA" /note="G1 box; other site" /db_xref="CDD:206750" misc_feature 1159..1182 /locus_tag="CAALFM_C602230WA" /note="Switch I region; other site" /db_xref="CDD:206750" misc_feature 1168..1170 /locus_tag="CAALFM_C602230WA" /note="G2 box; other site" /db_xref="CDD:206750" misc_feature 1216..1227 /locus_tag="CAALFM_C602230WA" /note="G3 box; other site" /db_xref="CDD:206750" misc_feature 1222..1230 /locus_tag="CAALFM_C602230WA" /note="Switch II region; other site" /db_xref="CDD:206750" ORIGIN 1 atggagaaca gcaataagat atcattacat ccagaacaaa agaaatggaa ggcaccaaaa 61 ggccctaaac caatacatca taagaacaaa aatcttattg gattaggtcg aaccattgct 121 aatcaaagat ccaaagaaaa ttccattcaa tatttacctg atggtgaaat gagattcaca 181 actgataaaa aggaggccaa ctgggttaaa ttaagatcag ttactcaaga aaatgccttg 241 gatgaatttt taagtactgc tgaattggcc gatactgatt ttactgctga taaaaatcaa 301 caagtgaaaa ttattaaggt tggaaatact tctattgtga attctaatgg attattaagt 361 actgatgaaa tgttagctat gagacaaaaa catatgatgt ttgaaaacaa attaactata 421 cctaaacgtc ctaaatggaa taaaaatcaa agtaaaattg aaattgatcg tcaagaaaat 481 ttagcatttt taagttggag aagagaatta gcacaattga cagaaaataa tgatttatta 541 ttaacacctt ttgaaagaaa tttagaagtt tggaaacaat tatggagagt tgtagaaaga 601 tgtgatttaa ttgttcaaat tgttgatgct agaaatccat tatttttccg atctatcgat 661 ttagataaat atgtcacttc attaagtgat ccagataata ataaggcaaa gaataattta 721 ttattagtca ataaggctga tatgttaact agagatcaac gtattgcttg ggcagaatat 781 ttcaaattga aaaaaataaa ttatgttttc ttttcagctg ctaaagccaa tgaattgtta 841 gaaaaggaac gtgaagagtt ggaaaatata caaaacagta ccggtagtag tagcagtagc 901 agtagaaaca ctaacaataa tgctgctgct gctgctgttg atgctgaaca agaagaaggt 961 gaagccaatg attcaattag gatattaaaa attgaagaat tggaaaaatt attcatggat 1021 tcggctccta aatttgaagt tgatcctgaa ttcccagata gaaaattaca aattgggtta 1081 gttgggtatc caaatgttgg taaatcatca accattaatg ccttagttgg atcgaaaaaa 1141 gtttctgttt cttctactcc tggtaaaacc aaacatttcc aaactattca tttatcgcca 1201 gatgttttat tatgtgattg tcctgggttg gtgtttccca atttcgctta taccaatgct 1261 gaattggtat gtaatggtgt tttaccaatt gatcaattac gtgaacatat tcctccagtt 1321 tcattagttt gtcaaagaat tcctaaattt ttccttgaag cagtttatgg tattcatatc 1381 ccaatacaga aagtcgaaga tggtggtaat ggggagtatc caacggccag agaattactt 1441 aatgcttatg ccagagcaag aggttatatg actcaaggtt tcggttcagc agatgaacca 1501 agagccgcta gatatatttt gaaagattat gtcaatggga aattattata tgttaaccca 1561 ccacctaaag aggcaactaa taaaaatgaa tggatattac caaatttaca agaaagtcga 1621 attttcaatc gagaattata tactttaaat catctaccag aatctagaca acatcaaata 1681 gtgtctgcta tgcaacataa acatataccg gttgatgaat tcaatttgga aaaggattta 1741 actaaattaa atttctcaca acatattgct gctattactg gtagtggcga ttcaaaagat 1801 gaagacaata aacttagaga caacaaccaa ctgcaatcag aagctaaaac attgttttat 1861 ggtgggaaac aagcagcatt agaaagtgct ggtgatgaat tggatagaga attctttgct 1921 atgaataata tttccggtaa atttgcaact ccgttccata aaaagaataa cagcaataca 1981 gaaaagaacc tgaataaaaa acataacaag aagaataaga aacaagataa gaaagttaga 2041 gtagtaggtt attaa