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Candida albicans SC5314 uncharacterized protein (CAALFM_C604530CA),

FASTAView on NCBI
LOCUS       XM_707325               2844 bp    mRNA    linear   PLN 18-APR-2022
            partial mRNA.
ACCESSION   XM_707325
VERSION     XM_707325.2
DBLINK      BioProject: PRJNA14005
            BioSample: SAMN02953594
KEYWORDS    RefSeq.
SOURCE      Candida albicans SC5314
  ORGANISM  Candida albicans SC5314
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade;
            Candida.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G.
  TITLE     Assembly of a phased diploid Candida albicans genome facilitates
            allele-specific measurements and provides a simple model for repeat
            and indel structure
  JOURNAL   Genome Biol. 14 (9), R97 (2013)
   PUBMED   24025428
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D.,
            Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B.,
            Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T.
  TITLE     Assembly of the Candida albicans genome into sixteen supercontigs
            aligned on the eight chromosomes
  JOURNAL   Genome Biol. 8 (4), R52 (2007)
   PUBMED   17419877
REFERENCE   3  (bases 1 to 2844)
  AUTHORS   Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S.,
            Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T.,
            Davis,R.W. and Scherer,S.
  TITLE     The diploid genome sequence of Candida albicans
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004)
   PUBMED   15123810
REFERENCE   4  (bases 1 to 2844)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 2844)
  AUTHORS   Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2016) Department of Genetics, Candida Genome
            Database, Stanford University, Mail Stop-5120, Stanford, CA 94305,
            USA
REFERENCE   6  (bases 1 to 2844)
  CONSRTM   Candida Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2016) Department of Genetics, Candida Genome
            Database, Stanford University, Mail Stop-5120, Stanford, CA 94305,
            USA
  REMARK    Sequence and annotation update by submitter
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_032094).
            
            On Dec 8, 2016 this sequence version replaced XM_707325.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: CGD
            Annotation Status   :: Full annotation
            Annotation Version  :: A22-s07-m01-r01
            URL                 :: http://www.candidagenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Candida albicans SC5314"
                     /mol_type="mRNA"
                     /strain="SC5314"
                     /host="Homo sapiens"
                     /culture_collection="ATCC:MYA-2876"
                     /db_xref="taxon:237561"
                     /chromosome="6"
                     /haplotype="A"
                     /geo_loc_name="USA: New York"
                     /collected_by="Margarita Silva-Hutner"
     gene            <1..>2844
                     /locus_tag="CAALFM_C604530CA"
                     /db_xref="GeneID:3645970"
     CDS             1..2844
                     /locus_tag="CAALFM_C604530CA"
                     /note="Ortholog(s) have role in endocytic recycling and
                     endosome localization"
                     /codon_start=1
                     /transl_table=12
                     /product="uncharacterized protein"
                     /protein_id="XP_712418.2"
                     /db_xref="CGD:CAL0000188018"
                     /db_xref="GeneID:3645970"
                     /translation="MPELDKLSSRFRPLYHYGPVTALKIYKHYIIAGYGPILKIFHIN
                     DQVDLIFDKQVFQRNKIHHIDINPENDTFVVSGGRSFLVSRLGELIDARTVSAMEHTI
                     NEWIVTSYVLDDNHILLLNSHNTIIKIDKHNFSVVDKIDCKEKSILYSGSITKLPSGD
                     IYVAAGTVMNGTIIWDLHSQKIKHNLTDHEGSIFGIKIDPSGQYIVSCSDDRSIKLYS
                     FNEGKLLATGWGHGSRIWCLEFFSGEPLKIMSCGEDCTMRMWEYRPGNDLLQQIELWE
                     NFHRGKHIWSGDVDNVELNIAVTGGADGKVRVHDLTQQDRQKFSLAEISFNISLNKSD
                     FIRDYFELPEFLVLLMSNGYLFIRKDNTFTSLGHFAEFDGFGIVSGFADLGVVLVCAR
                     DGRILSIDGSATPTWITNPCNNKIVNMLLDTNCGRHFVLLESPNPNVPFTLHELTYTT
                     SLQISKTWDIPKPESRFSVTAMTIDTVHQKLILASKKVTIGVFDLKTLAATVFRKVSP
                     GDSVSSLSIINTTPKSLQVLVVARDGFYTIADISGTSALNILQQNKITRGVIEGGFMN
                     NNDLILYGFKSSYFFVWNETKQMEIMNEQCGGSGHRHYKFYHDAAEYFKFIYTLKNEL
                     CIRTHHVRFSNTFGLIQNGTHGREIRDVAISSDHKLVATSSEDSSICLSKLSDDGKLV
                     NVWNMTNHVSGMQKIKFLSKDFIASSAANEEFIVWKLSWSQDLPMLMEYNRLNPTKEI
                     PDLRVMDFSSIKSDTGFTIATVYSDSNIKIWQFDLDSGFHLLKSWFYSTCCILNCQFL
                     NNHYLLISTTDGCVTIYDIATAKPVAKEKLHQSGVKAISIHQDYLITGGDDNAITVSQ
                     FDNTSIKLIDRVENAASATITSIGYVDDKSFITTSVDQIIRLWSFSSGKLVCHEARYT
                     TIADTGCCDTTTVNSKTLAVVGGAGISTWEILY"
     misc_feature    46..924
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    order(46..48,91..93,103..105,121..126,181..186,250..252,
                     295..297,313..318,355..357,370..372,388..390,427..429,
                     487..489,508..510,523..528,562..567,619..621,631..633,
                     649..654,688..693,745..747,760..762,778..783,820..825,
                     895..897,907..909)
                     /locus_tag="CAALFM_C604530CA"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     misc_feature    184..300
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    313..423
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    445..561
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    577..687
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    709..819
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    850..924
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1933..2835
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [General function prediction only];
                     Region: WD40; COG2319"
                     /db_xref="CDD:441893"
     misc_feature    1948..2058
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2071..2211
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2230..2358
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2377..2481
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2497..2607
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    2626..2697
                     /locus_tag="CAALFM_C604530CA"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
ORIGIN      
        1 atgccagaac tagataaact atcttcacgg tttaggccgc tttaccacta tgggccagtc
       61 acagcattaa agatttacaa gcactatatc attgcaggtt atggtccaat tttaaagatt
      121 ttccacatca atgatcaagt agatctaatt ttcgacaaac aagtgttcca gagaaacaag
      181 atccaccata ttgatatcaa ccccgaaaat gacacgtttg tggttagtgg tggacggtcc
      241 tttcttgttc tgagattggg agagttgata gacgccagaa cagtatctgc catggaacac
      301 acaatcaacg agtggattgt tacttcgtac gttttggacg acaaccatat actattgcta
      361 aattcccaca acacaattat aaaaatcgac aaacacaact tttctgtcgt ggataaaatt
      421 gattgcaagg aaaaatcgat attgtatagt ggatcaatta caaaactacc aagtggtgat
      481 atctatgtcg ctgccgggac agtaatgaac ggaactatta tctgggactt gcacagccaa
      541 aaaataaaac acaacttaac tgaccacgaa gggtctattt tcgggatcaa aattgaccca
      601 tcagggcaat atatcgtgtc gtgctccgac gacaggtcaa tcaagttgta cagctttaat
      661 gaagggaaat tgctagcaac cggctgggga cacgggtcaa gaatttggtg cttggagttt
      721 ttcagtgggg agcccctaaa gattatgtcc tgtggtgagg actgtaccat gcgtatgtgg
      781 gagtataggc ctggcaatga tctactccaa cagatagaat tgtgggaaaa tttccatcgg
      841 gggaaacaca tttggagtgg tgatgtcgat aatgtcgaat tgaatattgc tgtaaccggt
      901 ggggcagacg gcaaagtcag agtccatgac ttaacccagc aagaccgcca aaagttctcc
      961 ctcgccgaaa tatcattcaa catcagtctc aacaagtcgg attttattag agactatttt
     1021 gaattgccag aatttcttgt cttgttaatg tcaaatggtt atttgtttat acgtaaggac
     1081 aacacattta ccagtttggg ccactttgca gagtttgatg ggtttggaat tgtcagtgga
     1141 tttgcagatc ttggcgtggt gctagtctgt gctagagatg gaagaatctt gtctattgat
     1201 gggagtgcta ctccaacatg gatcaccaac ccatgcaaca acaaaatagt taacatgttg
     1261 ctagacacaa actgtggcag acactttgta ttgcttgaaa gcccaaaccc aaatgttcca
     1321 tttacactcc acgaattgac gtataccacc agcttgcaaa tctccaaaac atgggacatt
     1381 cccaaaccgg aactgagatt tagtgtaact gcaatgacaa tagatacagt ccaccaaaaa
     1441 ctcatattgg catcgaaaaa agttactatt ggtgtattcg atttaaagac acttgcggca
     1501 actgtgttta gaaaagtatc accaggtgat tcggtttcgt cgttgtcgat tattaacaca
     1561 acaccaaaaa gtctccaagt attggtagtt gctagagatg ggttctatac cattgccgac
     1621 atatcaggca cctctgcatt aaacatctta caacagaaca aaatcaccag aggggtaatt
     1681 gaaggtgggt ttatgaacaa caacgacttg atattgtacg ggtttaagtc gtcgtacttt
     1741 tttgtgtgga atgaaactaa acagatggaa atcatgaatg aacagtgtgg gggcagcgga
     1801 cacagacatt acaaattcta tcacgacgcc gccgaatact ttaaatttat ttacactttg
     1861 aaaaacgagt tatgtatacg tacccaccac gtacgattca gcaacacgtt tgggttgatt
     1921 cagaatggta ctcacggccg tgagatacgt gatgtggcaa tttctagcga ccataaacta
     1981 gtggcaacat cgtctgagga ttcgtccatt tgtctcagta aattgtctga cgatggcaaa
     2041 ctcgtcaatg tttggaacat gaccaaccac gtctcgggaa tgcaaaaaat caaattcctc
     2101 agcaaagact ttattgccag ttctgccgct aacgaagagt ttattgtatg gaaattgagc
     2161 tggtcgcaag acctcccgat gctaatggag tataaccgat taaaccctac caaagagata
     2221 ccagatttgc gtgtgatgga tttcagctcc ataaagagtg atacggggtt caccattgcc
     2281 acagtttatt ccgactccaa cattaagata tggcagtttg atcttgattc tgggttccac
     2341 ttgctcaagt cttggtttta ctctacatgc tgtatattga attgtcaatt cctaaacaac
     2401 cactacttac ttattagtac caccgatggg tgcgtcacaa tctacgacat agccaccgca
     2461 aaacccgttg caaaagaaaa actccatcaa agcggtgtca aagcgatatc tatccaccaa
     2521 gactatttga ttaccggtgg agacgataac gcgatcactg tctcccaatt cgacaacaca
     2581 tctatcaaac tcatcgatcg ggtcgaaaac gctgcttctg caactatcac ttcgattggg
     2641 tatgtcgatg acaaatcgtt tatcaccact tcagttgacc agatcatcag attgtggtcg
     2701 ttctcgctgg gcaaattagt ttgccacgaa gcaaggtata ctacaattgc cgacactggg
     2761 tgctgcgaca caactacagt aaatagcaaa acactagcag tggttggagg cgctggtatc
     2821 agtacatggg aaatcttgta ttaa