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LOCUS XM_707223 1551 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_707223 VERSION XM_707223.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1551) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1551) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1551) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1551) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1551) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1551) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1551 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1551 /gene="NOP5" /locus_tag="CAALFM_C600370CA" /db_xref="GeneID:3646084" CDS 1..1551 /gene="NOP5" /locus_tag="CAALFM_C600370CA" /note="Ortholog of S. cerevisiae Nop58; involved in pre-rRNA process; Tn mutation affects filamentous growth; macrophage/pseudohyphal-induced; physically interacts with TAP-tagged Nop1; Spider biofilm repressed" /codon_start=1 /transl_table=12 /product="RNA-processing protein" /protein_id="XP_712316.1" /db_xref="CGD:CAL0000190357" /db_xref="GeneID:3646084" /translation="MAYVLTETAAGYALLKAADKKIHKSSSLVEDLNTAEKVAEQFKI HRFEKFQSAANALEEANAIIEGKVSENLQKLLEDAKSDKKATLIVSEAKLGNAINKLG LNFQVVSDAASLDLQRAIKQFLPELLPGLDDSALKQMSLGLAHSMGRHKLKFSADKVD TMIIQAIALLDDLDKELNTYAMRCKEWYGWHFPELAKMITDSAAYARIILTMGVRSNA SETDLSEILPEEVEEQVKAAAEVSMGTEITEDDLNNIKALAEQIVDFAAYREQLSNYL SSRMKAIAPNLTAMVGELVGARLIAHAGSLTSLAKAPASTVQILGAEKALFRALKTKH DTPKYGIIYHASLVGQASGKNKGRIARTLAAKAAVSLRYDCFDEERDESDDFGLENRA KVEGRLSQLEGRDMRTTSKVVREQPKVEITEARAYNADADSTAAAAAAAPTADSDDEE SETEEVEEKKSKKDKKKDKKEKKDKKKDKKRKRDDDKEDKESSKKSKKDKKEKKEKKE KKAKKEKK" misc_feature 7..198 /gene="NOP5" /locus_tag="CAALFM_C600370CA" /note="NOP5NT (NUC127) domain; Region: NOP5NT; pfam08156" /db_xref="CDD:462382" misc_feature 508..1194 /gene="NOP5" /locus_tag="CAALFM_C600370CA" /note="snoRNA binding domain, fibrillarin; Region: Nop; pfam01798" /db_xref="CDD:460335" ORIGIN 1 atggcttacg ttttaactga aacagcagca ggatatgcct tattgaaggc agctgataaa 61 aaaatccaca aatcttcttc tttagttgaa gacttgaaca cagccgaaaa agttgctgaa 121 caattcaaaa ttcaccgttt tgaaaaattt cagtcagcag caaatgcatt agaagaggct 181 aatgccatta ttgaaggtaa agtttcagaa aatttacaaa aattattaga agatgccaaa 241 tcagataaaa aggctacttt gattgtctca gaagccaaat tgggtaatgc tatcaataaa 301 ttgggtttga actttcaagt tgtaagcgat gctgcatctt tggatttaca aagagccatc 361 aaacaatttt tgccagaatt attacctggt ttggatgatt cagcattaaa acaaatgtct 421 ttgggtttag ctcactctat gggtcgtcat aaattaaaat tctctgccga taaggtagac 481 accatgatta ttcaagctat agccttattg gatgatttag ataaagagtt aaatacctat 541 gccatgagat gtaaggaatg gtacggttgg catttcccag aattggccaa aatgattact 601 gattctgctg catacgctag aattattttg accatgggtg ttagatctaa tgcttctgaa 661 accgacttat ctgaaatctt accagaagaa gttgaagaac aagtcaaagc tgctgctgaa 721 gtgtctatgg ggactgaaat cactgaagat gatttgaata acataaaggc attggccgag 781 caaattgttg attttgctgc ttacagagaa caattatcca attacttgtc ttctcgtatg 841 aaagctatcg caccaaattt gactgctatg gttggagaat tagtcggtgc tagattgatt 901 gctcacgcag gttcattgac atcattagct aaagccccag cttcaactgt acaaattttg 961 ggtgccgaaa aggctttgtt cagagctttg aaaaccaaac atgacacacc aaaatatggt 1021 ataatctacc atgcttcatt ggttggtcaa gccagtggta aaaacaaagg tagaattgct 1081 agaacattag ctgctaaggc tgctgtgtca ttgagatacg attgttttga cgaagaaaga 1141 gacgaatcag atgactttgg tttagaaaac agagccaagg ttgaaggtag attgagtcaa 1201 ttggagggac gtgatatgag aaccacctct aaagttgtga gagaacaacc aaaagtggaa 1261 ataaccgaag cccgtgctta taatgcagat gccgattcta ctgctgctgc agctgctgct 1321 gccccaactg ctgattcaga cgacgaagag tccgagacag aagaagttga agaaaagaaa 1381 tctaagaaag ataaaaagaa ggataagaaa gaaaagaagg ataagaagaa ggacaagaag 1441 agaaagagag atgacgataa agaagataaa gaatcttcta aaaaactgaa gaaggacaaa 1501 aaggaaaaga aagagaaaaa ggaaaagaaa gcaaagaagg aaaagaagta a