Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_707219 2352 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_707219 VERSION XM_707219.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2352) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2352) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2352) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2352) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2352) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2352) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707219.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2352 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2352 /locus_tag="CAALFM_C600340CA" /db_xref="GeneID:3646074" CDS 1..2352 /locus_tag="CAALFM_C600340CA" /note="Ortholog(s) have metalloendopeptidase activity, role in cellular iron ion homeostasis, protein processing involved in protein targeting to mitochondrion, protein stabilization and mitochondrial matrix localization" /codon_start=1 /transl_table=12 /product="metalloendopeptidase" /protein_id="XP_712312.2" /db_xref="CGD:CAL0000183469" /db_xref="GeneID:3646074" /translation="MKAGIPLSRCTQRIPLLVARQVSRNITTTTTKFSLAPEYNHIRK VFDSQKYFNHFTKQGSHATLFSSPQTGLFHNEYLTTPQGLVDFSQQSLSQAKQLVSEM LSQVNTVDGKLKFIKKLDQLSDILCRVIDVAEFIRVVHPSVKWINAAQQTHEMMFEFM NQLNTNVELYSSLRDILNNPLITEQLTPEEIKVGEYLRQDFERSGIHMDPQTRENFVT ITQEISLLGSQFGNQINGLKSYWCPVTVAEWESIEDPQLKKEIKNYQSKYDGIRQSET IQIPLVANIPYTILTNCSSDTLRKKVWVALHNSPDEQIETLNRFISYRALLSKMLNYK SFADYQLEHKMAKTPENVITFLFNLQKSLIKKGVVEELSQLSEIKHNGSGSASVNDIV NDIKPWDRDYLLARLQQRMQSEVSAGNVKEYFSVGTVIAGLNELFTRLYDISFVPMAA LKGETWDSHQVRKIKVVDNAANKTLGFLYLDFWSTKVLPSHFTIVCSRRLNTSIGSET IEGMEKLVQLDEDYQLPVVSLVCNFASSGNFSFGRFAGVENEKPTLLTLDQVDTIFHE MGHAMHSMIGRTELHNLSGTRCSTDFVELPSVLMESFSKDPRVICQIGRHFDTDEKLP ESLLGQAHEHRIMLDACETFMQSKMAMLDQKLHNEEMVNLLAKGLYEVDSTKVYHSVE KELKVFADEWSTWHGKFPHLFSYGAVYYSYLLDRAIADKIWQGLFAKDPWNGEAGKKY KESVLKWGGTRDPWECLADALGNDELKQGDSRAMEIIGQNSNL" misc_feature 211..2322 /locus_tag="CAALFM_C600340CA" /note="Peptidase M3 mitochondrial intermediate peptidase (MIP); Region: M3A_MIP; cd06457" /db_xref="CDD:341052" misc_feature order(1462..1470,1693..1698,1705..1707,1780..1782, 1789..1791,1936..1938,2098..2103,2113..2118,2122..2127, 2134..2136) /locus_tag="CAALFM_C600340CA" /note="active site" /db_xref="CDD:341052" ORIGIN 1 atgaaagcgg gtataccact actgcgatgt actcaaagaa tacctttgtt ggtggcacgc 61 caggtctcca gaaacatcac aaccacaaca acaaagttct cactagctcc agaatataat 121 catatcagaa aagtgtttga tagtcaaaag tattttaatc atttcactaa acagggttct 181 catgcaactt tattcagctc tccacaaaca gggttatttc ataatgagta tttgactact 241 ccacagggat tagttgattt ttcccagcaa tcgcttagcc aagcaaaaca gttggttagc 301 gagatgcttt cacaagtcaa cactgttgac gggaaactta aatttatcaa gaaactagat 361 cagttgtccg atattttgtg tcgagtaatt gatgtggccg agtttatacg tgttgttcac 421 ccaagtgtca aatggataaa tgcggctcag caaacacacg aaatgatgtt tgaatttatg 481 aatcagttaa acaccaacgt tgaactatat tcaagtctcc gtgatatttt gaacaaccct 541 ttgataaccg agcagttaac accagaagaa ataaaggtcg gtgaatactt gagacaggat 601 tttgaacgat ccggtataca tatggatcca caaacaagag aaaactttgt tactataacg 661 caagaaatat cgttgttggg atctcaattt ggaaaccaga taaatgggct aaaatcatac 721 tggtgtccgg tgacagttgc cgagtgggaa agcattgaag acccccagtt aaagaaagaa 781 atcaagaact atcagtcaaa atatgatggt attagacaat cagagacaat tcagattcct 841 ctcgttgcaa acattcctta tacaattttg acaaactgta gttctgacac gttgcgtaaa 901 aaagtatggg tcgctttgca caattcacct gacgaacaga ttgaaacatt gaatagattt 961 atttcctaca gagccttatt gtcaaaaatg ttaaactaca agtcgtttgc agactaccaa 1021 ttagagcaca agatggcgaa aactcctgag aatgttatta cgtttttatt caacctacaa 1081 aagtcattaa tcaaaaaagg tgtggtggaa gagttgagcc agttgtcaga aatcaaacac 1141 aacggtagcg gctcagcaag tgtcaacgat attgttaatg acattaaacc ttgggataga 1201 gattacttat tggcaagact ccaacagaga atgcaatccg aagtgtcagc tggtaatgtt 1261 aaagaatatt tttcggtagg aaccgtcatt gctgggttga atgagttgtt tactagattg 1321 tacgatattt cttttgtgcc aatggccgca ttgaaaggtg agacgtggga ttcgcatcaa 1381 gtgcgcaaaa ttaaagttgt tgataatgct gcaaacaaga ctttagggtt tctttatttg 1441 gatttctggt cgaccaaggt tttgccatct catttcacaa ttgtgtgtct gagaagattg 1501 aacacaagta taggtagtga aacaattgag ggtatggaaa agcttgtcca gttggatgaa 1561 gattatcagt tgccagttgt ttcacttgtg tgcaattttg ccagttcagg aaactttctg 1621 tttgggagat ttgctggtgt tgagaatgaa aagccaacat tgttgacctt agatcaggtt 1681 gatacgattt tccatgaaat gggacacgcc atgcactcta tgattgggag aacggagttg 1741 cataatttat cgggcactcg ttgctccact gattttgtgg agttgccttc tgtgttgatg 1801 gagtctttta gtaaagatcc aagagttata tgccaaattg gccgtcattt cgataccgat 1861 gagaagttac ctgaaagtct ccttggacaa gcacacgagc atagaatcat gttagatgca 1921 tgtgaaacat tcatgcaatc caaaatggcc atgttggatc aaaaattgca taatgaagag 1981 atggtcaatt tactagccaa ggggttatat gaagttgatt ctaccaaggt gtatcatctg 2041 gttgaaaaag aattaaaagt ctttgcagac gaatggtcta catggcacgg aaagtttcct 2101 catttatttt cgtatggagc agtgtattac tcttatcttt tggatagagc aattgccgac 2161 aagatttggc aggggctatt tgccaaagat ccgtggaatg gagaagctgg taagaaatat 2221 aaggaaagtg ttttaaaatg gggtggtact agagatccat gggaatgtct tgctgatgca 2281 ttaggaaatg acgaattaaa gcaaggtgac tcacgagcca tggaaattat tggtcagaat 2341 agcaatttat ag