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LOCUS XM_707210 1110 bp mRNA linear PLN 18-APR-2022 (CAALFM_C600260WA), partial mRNA. ACCESSION XM_707210 VERSION XM_707210.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1110) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1110) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1110) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1110) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1110) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1110) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707210.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1110 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1110 /locus_tag="CAALFM_C600260WA" /db_xref="GeneID:3646065" CDS 1..1110 /locus_tag="CAALFM_C600260WA" /note="Ortholog(s) have ubiquitin-protein transferase activity" /codon_start=1 /transl_table=12 /product="ubiquitin-conjugating protein" /protein_id="XP_712303.2" /db_xref="CGD:CAL0000178323" /db_xref="GeneID:3646065" /translation="MIGREAAPSNRRTLSSKSNNSTPPINSSGSSRPSSPLEPPPPQS QQQQSSRRPSFGLNFLNNFTMRSHSSETASQPLMSNSPTLGNVHSHTHDDVSGNSQSF NEVAEESPLEEEEEPQNPAPEEIPQPPDSTYVDEDAKGGLDKDGFFSVRLTPLIDHSS TSSGLYFSPIIRRLSPKTSINIGRYTEKNKAAAHAPQGSSAPIVFKSKVVSRTHALFF CNEDGQWFLKDTKSSSGTFLNHIRLSPASQESSLMPIIDGDIIQLGMDYRGGTEEVYR SVKMRCHFNNSWQRKMNPYNIEMFKKLQIGDKQATECSICLNAIQPGHPLFISTCGHW WHYRCIHPLLQKSYPSFSCPNCRYVCDLEYFSESE" misc_feature 433..861 /locus_tag="CAALFM_C600260WA" /note="forkhead associated (FHA) domain superfamily; Region: FHA; cl00062" /db_xref="CDD:469597" misc_feature order(547..552,631..636,640..642,700..705) /locus_tag="CAALFM_C600260WA" /note="phosphopeptide binding site [polypeptide binding]; other site" /db_xref="CDD:438744" misc_feature 934..1071 /locus_tag="CAALFM_C600260WA" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(937..939,946..948,991..993,997..999,1006..1008, 1015..1017,1057..1059,1066..1068) /locus_tag="CAALFM_C600260WA" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN 1 atgataggca gggaagctgc accgtcaaat cgaagaacat tgtcgtccaa gtccaacaac 61 tcaacaccac ctataaactc gtcagggtcg agccgtcctt cttcaccatt agagccacca 121 ccaccacaac tgcaacaaca acaatcatct agaagaccat cgtttggttt aaacttttta 181 aataatttca ccatgcgttc gcattcatct gaaacagcat cacaaccgtt aatgtcaaat 241 agccctacat tgggaaacgt gcattcgcac acgcatgatg atgtttcagg caacagtcaa 301 tcattcaatg aagttgctga agagtctcca ttagaagagg aagaagaacc ccaaaatcct 361 gcaccagaag aaataccaca accaccagac tccacctacg tcgacgaaga cgcaaagggc 421 gggttagaca aggatgggtt cttttcagta agattgacgc cattaataga ccattcatcc 481 acatcgtcag gactatattt ctcgccaata attcgtcggc tttcaccaaa aacatccatc 541 aacatcggga gatacactga aaagaacaaa gcggcagcac acgcacccca gggatcttca 601 gcaccgattg tcttcaaaag taaagttgtt tcacgtacac atgcattatt tttctgtaat 661 gaagatggtc agtggtttct aaaagataca aagagttcat caggtacatt tctcaatcat 721 attagacttt cgcccgcgtc acaagagagc tcgttgatgc cgatcataga tggagatata 781 attcagttgg ggatggacta tagaggcggc acagaagaag tgtaccggct ggtgaaaatg 841 aggtgccact ttaacaatag ctggcaacgc aaaatgaacc cttacaatat tgaaatgttc 901 aagaaattgc aaatcgggga taagcaagcc accgaatgtt caatttgttt aaatgcaata 961 cagcctggcc atcctctatt tataagtact tgtggccatt ggtggcatta tagatgtata 1021 cacccattgc tacagaaaag ttatcccctg ttctcatgtc ccaattgtcg atatgtttgt 1081 gatttggaat atttttcaga gtcagaatag