Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_707208 1647 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_707208 VERSION XM_707208.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1647) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1647) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1647) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1647) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1647) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1647) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1647 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1647 /locus_tag="CAALFM_C600250WA" /db_xref="GeneID:3646063" CDS 1..1647 /locus_tag="CAALFM_C600250WA" /note="Ortholog(s) have fungal-type vacuole localization" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_712301.1" /db_xref="CGD:CAL0000196053" /db_xref="GeneID:3646063" /translation="MTTYHSTQDEQSSNTEESSQDAAPRPVSPSEVPADDREATQLES QPLLDPDDPRVSPLKLERIRLLKVIATTLVYVNLVLFVILLVSQFFAIPGFNNRGKSF LGLDLALVSLFINLTTNWFFAVPAYYERILGYITSGLLLIDFIVAFLVSPIRQSLGLL DLSLIAWVCLNSLFNSLIGYWVEEGKHYQEIRLTGRIEKRKTISELVIIFFKVLGEII ILWIVWCISLTLWINCFDTHEKPWGKLVPVNNNQFRVHLACFGDVHGKSDQPIVLVEG GQSTSSEAFQEWIEELHHLNKVERYCIWDRPGYGFSDSAPPPESLGIVTEYLMEALRK EKIEGPFSVVGFDIGGLYARMFASRNRAKIQSILFVDSWSPDLLKKWPFSGSGRKNES TKVFKKSLEVMDNITGFKLWLRGFVSPLGVLPNLHWFLHPMRFSSKSRIFGRDMVYSS KYIRARCQEQLVSGILSYNEIMDADINDLNVGVISSDFMIKKSLNWGKWQNEISKLSR KTSEWVIAENSDHFIWNSPKGRKELQQLLLRLIGEQEYLK" misc_feature 127..777 /locus_tag="CAALFM_C600250WA" /note="Region of unknown function (DUF2417); Region: DUF2417; pfam10329" /db_xref="CDD:431216" misc_feature 730..>1167 /locus_tag="CAALFM_C600250WA" /note="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; Region: MenH; COG0596" /db_xref="CDD:440361" ORIGIN 1 atgactacat accattcaac acaagacgaa caatcgtcca atacagagga gagtagccag 61 gatgctgccc cacgccctgt ctctcccagt gaagtacctg cggacgatag agaagccact 121 caattggaac tgcaaccgtt gttggatccc gacgacccgc gagtatcccc cttgaaatta 181 gaaagaatac gattattaaa agttattgcc acgacattgg tctacgtaaa cttggtgctt 241 tttgtgatat tattggtaag tcagttcttt gccatccccg gattcaacaa tcgtggtaaa 301 tcgtttttgg gactcgactt ggccttagtg agtttattta taaatttgac tactaattgg 361 ttctttgctg ttcctgctta ttatgagaga atattggggt atatcacgtc cgggctttta 421 cttattgatt tcattgttgc gtttctcgta tcgccaatcc gacaaagttt ggggttgtta 481 gatttatcgc taattgcctg ggtgtgcctc aattctttgt ttaattcttt gattggttat 541 tgggttgaag aaggtaaaca ttatcaggag attcgattaa ctggaagaat cgaaaaacgc 601 aaaaccataa gtgaattagt tatcatcttt tttaaggtgt tgggcgagat tattatacta 661 tggatagtct ggtgtattag tttgacattg tggataaact gttttgacac ccacgaaaag 721 ccatggggta aattagttcc ggttaacaat aaccaattca gagtacacct agcatgtttt 781 ggagatgttc acggcaaatc tgatcagcca attgtgcttg ttgaaggtgg gcaatcaacg 841 tcaagcgaag ctttccaaga atggattgaa gagttgcacc acttgaacaa agtcgaacgg 901 tactgtatct gggatcgacc aggctatgga ttttccgatt cggcacctcc gccagaatct 961 ttagggattg tcactgaata cttgatggaa gcattgagaa aagaaaagat cgaggggcca 1021 ttttcggtgg ttggatttga tattggcgga ttgtatgcga gaatgtttgc cagcagaaat 1081 cgagccaaga tccagtctat cctatttgtt gatagctggt cgcctgattt gttaaagaaa 1141 tggccattta gcggcagtgg cagaaaaaat gagagcacaa aagtgtttaa gaaatcctta 1201 gaggtgatgg ataatataac agggtttaaa ttatggttac gaggctttgt atcgcctttg 1261 ggggtcttgc caaacttgca ttggttccta caccctatgc ggttttccag caagagcaga 1321 atatttggcc gcgatatggt gtatctgtct aaatatatca gggctcgatg ccaggaacaa 1381 ttagtttcgg gtatattatc atacaatgag attatggacg cagatataaa tgacttgaat 1441 gtaggagtca tatcatcgga tttcatgatt aaaaagctgt taaactgggg caagtggcaa 1501 aatgaaatca gtaaactaag tagaaaaaca agcgagtggg taattgctga aaatagtgat 1561 cactttatct ggaatagtcc aaaaggtaga aaggagttac aacagttgtt attaagatta 1621 ataggtgaac aagagtatct taagtag