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LOCUS XM_707004 6051 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_707004 VERSION XM_707004.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 6051) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 6051) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 6051) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 6051) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 6051) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 6051) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_707004.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..6051 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>6051 /gene="CDC39" /locus_tag="CAALFM_C604270WA" /db_xref="GeneID:3646278" CDS 1..6051 /gene="CDC39" /locus_tag="CAALFM_C604270WA" /note="Protein similar to S. cerevisiae Cdc39p, which is part of the CCR4-NOT transcription regulatory complex; transposon mutation affects filamentous growth" /codon_start=1 /transl_table=12 /product="CCR4-NOT core subunit" /protein_id="XP_712097.2" /db_xref="CGD:CAL0000177338" /db_xref="GeneID:3646278" /translation="MSFKELLIEIGPENLLPEKLLPSLLQIKPNEIDQGIALILAEIL IPGSQGLSQGLTFASSLPGSNAKGAQLQTCFKSIENSGKFNVNWYEVFNHVHQYLFDS SQRDIQPSVGSITQFLSSLDFKQEPIDIFLNYEWWFNKTLLYILHSSDASQGGYDISL SPNLAYCFEEDKTTPQTRRNILKFINVGKLEIQVITKIQQQQQQQQQQQQQQHQLSEQ DKKLNAFLNQLFEHDYRVFPEYILAAALTVVEKSQFINDLIDTLFYLLVDSASPSLPK VVRLLKESGLAAIKLADYYKSRKTIDAADKVLTLASSFGLTQEILDIFWAFDSKIAIK ILVESSLFGYDYKSVIDSKLKDPQVKTSIYQALCEALDERAQKDYERGQQVQQAQQLQ QQQALPPHQVLKIPTVYYLLEKIKSSNGVVDAKTLRNLQLLLLTTYPRLINFGNGHDE AILANEEKSPFFPPSVEMEMKAYYSKMYNKELEIKEIVDMLTQMKASDDLHSQDVFAC MIHSLLDEYKFFSEYPLSALASTSLLFGALLEKDLIQGTTLTVALNFIWESCNQPQDS HLFKFAVQSLYNFKSRLHEYPIYCKHLLECRSLSAHAKMYQIVKDAANGIPCTTGAAP TQTNTPDVGPKYQSINYVDRTIGYATQEEPPESIRDKLLFSVNNMTGENLRLSEIQEV LTESYFAWFSDYLVSDRAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEVDYIIRN FKDSRSERNQLKNLGAWLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPLILPFVCK ILDQAQYSKVFKPPNPWVVGVMKVLAELYECADLKLQLKFEIEVLLNSFNMKIKDIEQ STIIRNHNPEPTALARMFGISSQSVNLANEMTRLSLEGSQLGNNIQAPFPQQIIESKQ FPGISQPQMQNVLQQQQQQQQQQQQQQLPPQQQLPGQLPPQQQAEPALDTSFSTLIGN SIFTQHANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEKFR NSYQKLALSLSHAMVSCNGRKALVETIEATMLQLLGNNPNEVPLAELNSAIQANVGLC VDIVDVLVGESILDIIEARMQTEVFLREHHTATAPNEPFIAEGASDYSLRLPNPLGLA LTGLSAQQLKIYEHFGEARVDQIVPPPGSTGITQQQTQSLAPLQQQQQQQQQQQPVST VVAAAPAPAPPQQQQQSKERIAQAQGVPDDIVSFEQLFTAITANCDKAVQLVSEVTET KLADLPPNHSIMAALTQALVIAQTNAIKYPELLLKAAQYAVNCLFTQTHENPMSNEIY VVILDKLCEYSPSTAKDVIWWLVHSSDQRKFNMPVMLSLLKVQLIQPIKLDLSIGKLI KETNNPVVVKFAASLLTNIFTSEEMRPIALRSEFANTLDALSKYQANDQSEEDRQAKE ATSTLFKLLSEAAPASNQLFAQLGYIFAEWVRLLTHGDDATNELQIEFVKGLIQSGIL NNPEYVKTFFKAAIEISITSFATEHELRSRTQHETYFAVDTLAMLIVRIVLLVEDSKQ AIDYLKKVLGIIILNLINDHETSKANWNERAYFRFFSSLLSTWCDASVLDEEVTVNLD VEFYNYLGELFNALQPIVLPGFTFAWISLISHRMYLPKLLELPERKGYATLVKLLSSA LKFQQIYGNNKQSSRRQQELEQEQEQEQKDEKDAKDAKEQNQEQEQEQENSQQGPEVI NVTYKAINRIFIGILHDFPEFLVECHYQLVTSIPRGYIQLRNIVLSATPKDIHVPDPF TQGLKVERLPEINESPVVFYKPIEDLSKVGLKKPVENFLRIPAPGLMRTIYNGLKLNQ PKEVNELGYEETINFNIKLINALVLHVGISSVADRLPNNRGFNTKSSQVALLVDLMNY GNTEFKYHLINAIANQLRYPNSHTHWFIGIILHFFSNNNIWNSNGNKLVVQEIITRVL LERRISNKPHPWGLTILFTELVKNGDYGFFELPFVKDSVEEVKNIFNVLSINVKGSTP " misc_feature 7..738 /gene="CDC39" /locus_tag="CAALFM_C604270WA" /note="CCR4-NOT transcription complex subunit 1 HEAT repeat; Region: CNOT1_HEAT_N; pfam16419" /db_xref="CDD:406747" misc_feature 766..1248 /gene="CDC39" /locus_tag="CAALFM_C604270WA" /note="CCR4-NOT transcription complex subunit 1 HEAT repeat; Region: CNOT1_HEAT; pfam16418" /db_xref="CDD:465113" misc_feature <1312..6045 /gene="CDC39" /locus_tag="CAALFM_C604270WA" /note="Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]; Region: CDC39; COG5103" /db_xref="CDD:227434" ORIGIN 1 atgtcattca aagaattatt aatcgaaatt ggtccagaaa acttattacc agaaaaattg 61 ttaccaagct tattgcagat caaacccaac gaaattgatc aaggtatagc attaatatta 121 gctgaaatat tgatacctgg gtctcaaggg ttatcccaag gattgacttt tgccagtagc 181 ttgccaggct caaatgccaa aggcgctcaa ttacaaacat gtttcaaatc tattgaaaac 241 tctgggaaat tcaatgtcaa ctggtacgaa gtgtttaatc acgtgcatca atatttattt 301 gactcgtcac aaagagatat ccaaccatca gttggcagca ttacccagtt tttatcgtca 361 ttagatttca aacaagaacc aatagatata ttcttgaact acgaatggtg gttcaataag 421 acattgttgt atatattgca ctcactggat gcatcccagg gtggttatga tatatcgttg 481 ctgcctaatt tagcttattg ttttgaggaa gataaaacca ctccccaaac aagaagaaac 541 attttgaaat ttattaatgt gggtaaacta gaaatccaag tgataaccaa aatacaacag 601 caacagcaac aacaacaaca acaacaacaa caacaacacc aattgagtga gcaagataag 661 aaactaaacg cgtttttaaa tcaattgttt gagcatgatt atcgtgtgtt cccagaatat 721 attttggccg ctgcattaac tgtcgttgag aaatcccaat ttataaatga cttgattgac 781 acgttgtttt atttgttggt agatagcgct agtccttcgt tgcccaaagt agtacgttta 841 ctcaaggaat cgggacttgc cgctatcaag ttggctgatt actataagag cagaaaaacc 901 attgatgcag cagacaaagt gttgactttg gcatcaagtt ttggattgac ccaagaaata 961 ttggatatct tttgggcatt tgatctgaaa attgctataa aaattttggt agaatccagt 1021 ctttttggat atgactacaa atctgttatt gactccaagc ttaaagatcc acaggtcaaa 1081 acatccatct atcaagcatt gtgtgaagca ttggacgagc gggcccaaaa agattatgaa 1141 aggggccaac aggttcagca agcacaacaa cttcaacagc aacaagcgct cccacctcat 1201 caagttttga aaatccctac tgtttattat ttacttgaaa aaatcaaatc gagtaatgga 1261 gttgttgatg ctaagacgtt gagaaatctt caattattgt tgttaacaac ctatccaagg 1321 ttaatcaatt ttggaaatgg tcatgatgaa gccattttgg ccaacgaaga gaaatctcca 1381 ttcttcccac cttctgttga aatggaaatg aaagcttatt attctaaaat gtataacaaa 1441 gagcttgaga ttaaagaaat tgttgacatg ttgactcaaa tgaaggccag cgatgatctc 1501 cacagtcaag atgtctttgc atgcatgatc cactctttat tggacgagta taagtttttc 1561 tcagagtatc cattgtcagc attagcttca acatccttgt tgtttggtgc acttttagaa 1621 aaggatttga ttcaaggtac gactttaact gttgcattga attttatttg ggaatcttgt 1681 aaccaaccac aagattcaca tttgttcaaa tttgcggtac aatcattgta caacttcaaa 1741 tcaagattgc atgagtatcc aatttattgt aaacacttgt tggaatgtcg ttcattatct 1801 gcgcatgcca agatgtacca aatagtgaag gatgcagcta atggtattcc atgtaccact 1861 ggtgcagctc ctactcaaac taatacacca gatgttggtc caaaatatca gtctattaat 1921 tatgttgata gaactatagg ctatgcaacc caagaagaac caccagagtc tatcagagat 1981 aagttattat tcagtgtcaa caatatgaca ggtgaaaatc ttagattatc tgagatccaa 2041 gaagtattga ctgagagtta tttcgcatgg ttttcagatt atttggtatc agacagagcc 2101 aaggcagaac caaacaacca cgaattatat tccaagttgg tcaagtcgtt agcaaatcca 2161 atcttttttg agtatatttt gaatgtttct ttgaaagagg ttgattatat tatccgtaat 2221 tttaaggatt caagaagcga aagaaaccaa ctaaagaatt taggtgcttg gttaggacga 2281 atcacattag ccaatgataa accattgaga agagattata ttgccttgaa gtttttatta 2341 gtggaggcgt acgatttcaa ctcgttgcca ttgattcttc cgtttgtgtg taaaatcttg 2401 gaccaggctc aatattcaaa agtgttcaaa ccaccaaacc cttgggttgt tggggttatg 2461 aaggttttag ctgagttgta tgaatgtgct gatttgaaat tacaattaaa atttgaaatt 2521 gaagtgttgt tgaattcatt caatatgaag atcaaagata tcgagcaaag tactattatt 2581 agaaatcata atcctgaacc aactgcatta gcaagaatgt ttggtatcag ttcacaatca 2641 gtgaatttgg caaatgaaat gacaagattg tctttagagg gctcgcaatt gggtaataat 2701 atccaagcac cattcccaca acaaattatt gaatctaaac agttcccagg aatctcccaa 2761 ccacagatgc aaaatgtttt acaacagcaa caacaacaac aacaacaaca acagcagcaa 2821 caattaccac cgcagcaaca gcttccaggg cagttgccac ctcaacaaca agcggaacca 2881 gctttggata ccagtttcag cacgttaatt gggaactcta ttttcactca gcatgcaaat 2941 ttgcgcagag catttcaagc atctttatct cgtgcagtta gagaatgtac tccacacatt 3001 tgtaacaaag ttgtggaaac tgttgttacc accaccaaag ctttaatcac taaggatttt 3061 gctacggaac gtgatattga gaaatttcgc aacagttatc agaaattggc attgctgttg 3121 tctcatgcaa tggtgtcatg caatggaaga aaagcattag ttgaaacaat cgaggctact 3181 atgttgcagt tattgggcaa caatccaaat gaagtacctt tagctgaatt gaatagtgcc 3241 attcaagcca atgttggttt atgtgttgat attgttgatg tgttggtagg tgaaagtatt 3301 cttgacatca tagaggcaag aatgcagaca gaagtgtttt tgcgtgaaca tcatactgcc 3361 acagctccaa atgaaccatt tattgcagaa ggggccagtg attactcgtt gagattacca 3421 aatcctttag gattagcact taccggattg agtgcacagc aattgaagat ttatgaacat 3481 tttggagaag caagagtgga tcaaattgta cctcctccag gaagtaccgg tataacacaa 3541 caacaaacac aatcattagc accattacaa cagcaacaac agcaacagca acagcaacaa 3601 ccagtatcta cagtagtagc ggcagcacca gcaccagcgc caccacaaca acaacaacaa 3661 ctgaaagaac gcattgcaca agcacaaggt gttcctgatg atattgtttc gtttgaacaa 3721 ttgtttactg ctattactgc caactgtgac aaagccgttc aacttgtttc tgaagtcaca 3781 gaaaccaagt tagcagattt gccaccaaac cattccatta tggcggcatt gactcaagct 3841 ttggtgattg cacagaccaa tgccataaaa tatcctgagt tgttattaaa ggctgcacaa 3901 tatgcagtca actgtttgtt tactcagaca cacgaaaacc caatgagtaa tgaaatctat 3961 gttgttattt tagacaaatt gtgtgagtat tcaccttcta ccgccaaaga tgttatttgg 4021 tggcttgtac actcatctga tcaacgtaag tttaatatgc cagttatgct ttcattattg 4081 aaagttcaat taatccagcc aattaaatta gatttatcta ttgggaaatt gattaaagaa 4141 acaaataatc cggttgtagt aaagtttgct gctagtttgt tgacgaatat ttttacttcc 4201 gaagagatgc gtcctattgc gttacgatcg gaatttgcta atacattaga tgccttatct 4261 aaataccaag caaatgatca aagtgaagaa gacagacaag caaaggaggc aactagtaca 4321 ttgttcaaac tcttgagtga ggcagcaccc gcttcaaacc aattatttgc tcaattgggt 4381 tatatatttg ctgaatgggt aagattgttg actcatggag acgatgcaac aaatgaatta 4441 caaattgaat ttgtcaaggg attgattcaa tctggtatac ttaataatcc tgaatatgta 4501 aagacttttt tcaaagcggc cattgagatt tccattacat cgtttgccac tgaacatgaa 4561 ttacgttcaa gaactcaaca tgaaacatac tttgccgttg atacattggc tatgttgatt 4621 gttcgaattg tattgttagt tgaagattct aagcaagcta ttgattattt gaagaaagta 4681 ttgggaataa ttattttgaa tttaattaat gaccatgaaa cttcaaaggc caattggaat 4741 gaacgtgctt atttcagatt tttttcatct ttgttatcga catggtgtga tgcttcagtt 4801 ttggatgaag aagttactgt taatttagat gttgaatttt ataattatct tggagaatta 4861 tttaatgcct tgcagccaat tgttttacct ggttttacat ttgcttggat ttcattgatt 4921 tcacatcgta tgtatttgcc caagttatta gaattaccag agaggaaagg ttatgcaaca 4981 ttggtcaaat tattgagttc ggctttgaaa ttccaacaaa tttatggtaa caacaagcaa 5041 tcatcaagac gacaacaaga acttgaacaa gaacaagaac aagaacaaaa agatgaaaaa 5101 gatgcaaaag atgcaaaaga acaaaatcaa gaacaagaac aagaacagga aaactcacaa 5161 caaggacctg aagtgatcaa tgtaacttat aaagccatca acagaatttt cattggtatt 5221 ttacatgatt tccctgaatt tttagttgaa tgccattatc aattggtgac cagtattcca 5281 agaggatata ttcaattaag aaatattgtt ttatcggcca cacctaaaga tatccatgta 5341 ccagatcctt tcactcaagg gttaaaagtt gaaagattac ctgagatcaa tgaatcacca 5401 gtagtgtttt ataaaccaat tgaagatttg agtaaagttg gattaaagaa acccgttgaa 5461 aactttttaa gaattcctgc cccagggttg atgagaacaa tttataatgg attaaaattg 5521 aatcagccta aagaagtgaa tgaattaggg tatgaggaaa cgatcaattt caatataaaa 5581 ttgatcaatg cgttggtgtt gcacgttgga atatccagtg ttgctgatag attacccaat 5641 aatcgaggat ttaataccaa gtcatcacaa gtggcattat tggttgattt aatgaattat 5701 ggaaacactg aattcaaata tcatttgatc aatgctattg ctaatcaatt gagatatcca 5761 aatagtcata ctcattggtt cattggtatt attttacatt ttttcagtaa taacaatatt 5821 tggaacagta atggtaataa gttggttgta caagagatta tcactagagt tttattggaa 5881 agaagaatca gtaataaacc acatccttgg ggattaacta tattatttac tgaattggtt 5941 aagaatgggg attatggatt ttttgaattg ccatttgtta aagattctgt tgaagaagtg 6001 aagaatattt tcaatgtttt gagtataaat gttaaaggtt caactcctta a