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LOCUS XM_706236 1440 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_706236 VERSION XM_706236.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1440) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1440) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1440) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1440) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1440) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1440) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_706236.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1440 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1440 /gene="COX15" /locus_tag="CAALFM_C600720CA" /db_xref="GeneID:3647071" CDS 1..1440 /gene="COX15" /locus_tag="CAALFM_C600720CA" /note="Cytochrome oxidase assembly protein; transcript regulated by Nrg1 and Tup1; alkaline repressed; Hap43-repressed; early-stage flow model biofilm induced; Spider biofilm repressed" /codon_start=1 /transl_table=12 /product="Cox15p" /protein_id="XP_711328.2" /db_xref="CGD:CAL0000185068" /db_xref="GeneID:3647071" /translation="MLSKTRFFFTKNSLVLNTLQQNKGCKLSIVSRTAPASKLFPSSF KISRIFNNLSKRKYSTISHRVDSTFTKTEFVKSTPPPVIPQKSIGYWLLGTSTLVFGI VVLGGLTRLTESGLSITEWKPVTGAVPPLNQQEWEEEFNKYKNSPEFKQLNSHITLDE FKFIFGMEWGHRLVGRCIGAFFILPALYFWARGRFTPQLTKRVVGLTGLLGLQGFIGW WMVKSGLDEEQLAERKSKPTVSQYRLTTHLGAAFLMYLGVLWTAFEIFNENKLANLAK KSPEAVQAILKQLNNPALKKTKIVGLSLLALTFVTAMSGGMVAGLDAGLIYNTFPHMG DDWIPNGSELMSPVFSRKSDQSDLWWRNLLENPTTVQLVHRIFATTTFFAVLGAHIYV NRNKGVVPIAAKRIMHGVMGVVTLQVALGITTLIYLVPIPLAALHQAGALALLTASLA FSAKLKKPRPQFVQFINSNMKSKLLKTRV" misc_feature 55..1314 /gene="COX15" /locus_tag="CAALFM_C600720CA" /note="Cytochrome oxidase assembly protein; Region: COX15-CtaA; cl19388" /db_xref="CDD:473166" ORIGIN 1 atgttgtcca agaccagatt ctttttcaca aagaattcac tcgtgttgaa tactttacaa 61 caaaacaagg gttgtaaatt atctattgta tcacgaacag caccagcttc taaactattt 121 ccatcgtcat ttaaaatttc aaggattttt aacaatttaa gtaagagaaa gtattccact 181 attagtcata gagtagattc aactttcact aaaactgaat ttgtcaagtc taccccacct 241 ccggtgattc cacaaaaatc tattggatat tggttattag gaacttctac tttggttttc 301 ggtattgttg ttttaggagg attaacaaga ttgactgaat ctggtttatc cattactgaa 361 tggaaacctg tgactggagc agttcctcct ttaaatcaac aagaatggga agaagagttt 421 aataaatata agaattcccc tgaattcaaa caattaaatt ctcatattac tttagatgaa 481 ttcaagttta tttttggcat ggaatggggt catagattgg taggaagatg cataggggct 541 tttttcattt tacctgcttt gtatttttgg gctaggggta gattcactcc tcagttgaca 601 aaacgtgtgg taggtcttac tgggttatta ggtttacaag ggtttatcgg ttggtggatg 661 gtcaaatcag gattggatga agagcaatta gccgaaagaa aatctaaacc aaccgtttct 721 caatatagat tgactaccca cttgggtgct gcatttttaa tgtacttggg ggtattatgg 781 actgcatttg aaattttcaa tgagaataaa ctcgccaact tggctaaaaa atcgccagaa 841 gctgtgcaag caattctcaa acaattaaat aaccctgcct tgaaaaaaac caaaatagtc 901 ggtttgagtt tattagcatt gacttttgta acagccatgt ctggtggtat ggtcgctggt 961 ttagatgctg gtttaatcta taacactttc ccacacatgg gtgatgattg gattccaaat 1021 ggaagtgaac ttatgtctcc agtcttttcc agaaaatcag atcaatcaga tctttggtgg 1081 agaaatttat tggaaaaccc aaccactgtt caattagtac atcgtatttt tgcaactacc 1141 actttctttg ctgtcttggg agcacatatc tatgtcaaca gaaacaaagg tgttgtacct 1201 attgctgcta aaagaataat gcatggtgtt atgggggttg ttacgttgca agtagcattg 1261 ggaataacta cattgattta tttggttcca attccattgg ctgcattgca tcaagcaggt 1321 gccttggctt tattaaccgc ttcattagca ttttcagcta aattgaagaa acctagaccg 1381 caatttgtac aattcatcaa ttccaatatg aaaagcaaat tattaaaaac gagagtttga