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LOCUS XM_706163 1989 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_706163 VERSION XM_706163.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1989) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1989) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1989) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1989) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1989) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1989) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_706163.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1989 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1989 /locus_tag="CAALFM_C600560WA" /db_xref="GeneID:3647143" CDS 1..1989 /locus_tag="CAALFM_C600560WA" /note="Ortholog(s) have role in nuclear pore organization, spindle pole body duplication and nuclear pore transmembrane ring, spindle pole body localization" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_711255.2" /db_xref="CGD:CAL0000193069" /db_xref="GeneID:3647143" /translation="MTTFSREFTKVYDYQALFNKVLNKRLRFVLNINLILSFILALVY EFMPTANSNSDTNHSIWQSIPVLICVKVPTIFFTLSVIRQVRKQFLIVEYSHHKTLGA QIYYSILSFQFLINWLGYLISSWLIFGVVIIFTSKLKFNLSDYYILSKEYRQHPIIND QWVYYWYNPVFISFFYTCNQLIFQRQRLNFEIGNIRNKPQNYLFKHLPILLGNSLGLN LFVISLTPITYWLVKYYIYKSFILIILIFRLDSDIIPNNNTSWITYLQLSYLSFFIIL SWEVVNHVFNVYATIGCLDGNKPISSYSTDPLNCLLSGLRDVDPNYQLSRLTAFQELA YLATSSDKEALKLRFKIFSFRSKKLNAWTSLLEECALVIKETTDRINYRSTSDLNALK SLEISGLKGNINNYRDSKQNSDNLFGNSFINTSPVDKKSSELIKKYQANTSTTAEGKK KSNKVQELIGSIQHFASQFFGNFQKTIGDANQLQEKFAKSFNFKHYLQIYQNYKDKFL QTYIGIFFRITIKRDNESRIINPINFCNSIIAISNLLQYSIEEDKYDIISNDDVCKVL NLLEKPIRATTNYIDYLPASVYVPQNSQPKKHSCLMGKLHDLSMHEFYEICIRFNGKL NDLILTPRTYKLVKWVIDKEIAIQQEIQKQKHQKLNLK" misc_feature 58..1914 /locus_tag="CAALFM_C600560WA" /note="Nucleoporin protein Ndc1-Nup; Region: Ndc1_Nup; pfam09531" /db_xref="CDD:462824" ORIGIN 1 atgacaacgt ttagtaggga gttcacaaag gtgtatgatt accaagcact tttcaacaaa 61 gttttgaaca aacgtttgag atttgtgctt aatatcaatc taatattgtc cttcattcta 121 gcattagtgt acgaatttat gcccacggcg aattcaaatt cagatacaaa tcattcgatt 181 tggcaaagca ttcctgtatt aatatgtgtc aaagttccaa ccattttttt tactttaagt 241 gtaattcgtc aagtccgtaa acagtttttg attgttgaat attctcatca taaaacattg 301 ggagcacaaa tttattattc aattttatcc ttccaatttt tgatcaattg gttggggtat 361 ttgatatcta gctggctaat attcggagtg gtgataattt tcaccctgaa attgaaattt 421 aacttgtcag attactatat attatctaaa gagtatcgtc aacatccaat aattaatgat 481 caatgggttt actattggta taatcctgtt ttcatttcat ttttttacac ttgcaatcaa 541 ttgattttcc aaagacaacg tttaaatttt gaaattggta atatcagaaa taaacctcaa 601 aattatttat ttaagcacct ccctattttg ttgggtaatt ctttgggttt gaatttattt 661 gtgatatcgt tgactcctat aacttattgg ttagttaagt attatattta taagagtttc 721 attttgatca tattgatttt cagattggat agtgatatta ttcctaataa taacactagt 781 tggataacat atttacagtt gagttatttg tcgtttttca ttattttaag ctgggaagtt 841 gtcaatcatg ttttcaatgt atatgcgact attgggtgtc ttgatggcaa caaaccaatt 901 tcgagctaca gtactgatcc actcaattgt ttattatctg ggttacgtga cgtggaccct 961 aactatcaat tgagtagatt gactgctttc caagaattgg catatttagc aactagttca 1021 gataaggagg cgctcaaatt acgtttcaaa attttcagtt ttcgttctaa gaaattgaac 1081 gcctggactt cattattgga agagtgtgca ttggtaatca aggaaactac agatagaatc 1141 aattatagaa gcacaagtga tttgaatgca ttaaaaagtt tagagatttc tggacttaaa 1201 ggcaatatca ataactaccg tgatagtaaa caaaattcag acaatttatt tgggaactcg 1261 tttattaaca ctagtcctgt tgacaaaaag tcactggaac taattaagaa atatcaagcc 1321 aatacatcta ccactgctga gggaaaaaag aaatccaata aagtacaaga actcattgga 1381 ctgattcaac attttgcctc acagtttttt ggaaattttc aaaaaacaat tggtgacgcc 1441 aatcaattac aagaaaaatt tgcaaaactg tttaacttca aacactattt gcaaatttat 1501 cagaattata aagataaatt cttacaaacc tatattggga tatttttcag aatcactata 1561 aaaagagaca atgaatcaag aataatcaac cccatcaatt tctgcaactc aattattgct 1621 atatcaaact tgttacaata ttcaattgaa gaggataagt acgatatcat tagtaatgat 1681 gacgtttgta aagttctaaa tttacttgag aaaccaatta gagccacaac aaactatatt 1741 gattatttac cagcatcggt ttatgtgccg caaaattctc aacctaaaaa gcatagttgc 1801 ttgatgggga aattacacga tttatctatg catgagtttt atgaaatctg tattcgattt 1861 aatgggaaat taaatgattt gatattgaca ccaagaactt ataaattggt taaatgggta 1921 attgataagg aaattgctat tcagcaagaa attcaaaaac aaaaacatca gaagctaaat 1981 ttaaagtaa