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LOCUS XM_705475 2637 bp mRNA linear PLN 18-APR-2022 (CAALFM_C604060WA), partial mRNA. ACCESSION XM_705475 VERSION XM_705475.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2637) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2637) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2637) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2637) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2637) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2637) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2637 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2637 /locus_tag="CAALFM_C604060WA" /db_xref="GeneID:3647828" CDS 1..2637 /locus_tag="CAALFM_C604060WA" /note="Ortholog(s) have ribosomal large subunit binding, ubiquitin-protein transferase activity" /codon_start=1 /transl_table=12 /product="ubiquitin-protein ligase" /protein_id="XP_710567.1" /db_xref="CGD:CAL0000189523" /db_xref="GeneID:3647828" /translation="MVRPDKIDYFIQNLGMTIDEKRFPEIYSHLTDISKEGMSKDQIE MIVKSTKDKDVLLNVIQSLDDEDAYLKFIELVVQYNLLPIIIDLDISKLLHIAWNHLN VEFLTVLREFKDNYLASMIGFIKLGSLNDDFYKFIKTGPLPIEQFKQRILDAISKIDI FTVAISNPLDSAVYLCNERATSPQLDDFIPTIGKFLNKIDENVDTLLLLIKEYFADYI LLKDDVDEDVVDVLSSIQQKVSKHFESFKFGDLINENNPTFQELWQFVEGNDIQAFYA ARIIKRAIEDSLEFESLASFESFDINYTKLVKSPFKFVSMVAGFSKFLNSKKLNRIRN YVLSEILAVKKDEQIIADGIKWVSLSLVFFNTEFGTDVYPIHKLTMVLRLISDWLDSS VAYDNEFIDLRVLISRFLGFIIQNQTNIPDNYYELANKVLENNFEIIQLEPNRLDLNY YTLKFYISVMDKRVSKFDEELIDIFINFNATCRNQATILVEQTIARVLRESPIEMKIV QSKKDSIFKLFTDSKSISVQRICTWYLRQIILLEQQDFVVEYQLSKNDEEMQARIPEE LIKIVNHTLGHQEYEVFQYMWSWILILSYMEDITLKMKNEYIGQLLQNKELPILFDFV FEYLHIEDESLYIIDSGKPQDIENNVIPNYDLIETGKSESSTHELKLLATYLYFKCAQ LCGSQVQLWFQEIRDKQFKNIVEKFTVKFISPILVKDIKQNVGKEIGKLQQNEVNIKI GTNQIKANIPVEEENISMRWSIPANYPLSNVAVEGPLCVGVKENQWKAWLLASQKIIS LTNGSIAKSIELFCKNVNLHFSGFEDCAICYSILHQDSSLPSKTCTTCSNKFHAACLY KWFKSSGSSTCPLCRSTFNFRR" misc_feature <874..2631 /locus_tag="CAALFM_C604060WA" /note="Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Region: COG5219" /db_xref="CDD:227544" ORIGIN 1 atggttagac cagacaaaat tgattatttc atacaaaatc taggaatgac aatcgacgag 61 aaacgcttcc ctgaaattta ttcccattta actgatattt caaaggaagg aatgtcgaaa 121 gatcaaattg aaatgattgt aaaatctact aaagacaaag atgttttgtt aaacgttata 181 caatctttag atgatgaaga tgcctatttg aaatttattg aactagttgt tcagtataat 241 cttttgccaa ttattattga tttagatatc tccaaactcc tccatattgc ttggaatcat 301 ctaaatgttg aatttttaac cgtgttgaga gaattcaaag ataactatct tgcgtcgatg 361 attggattta tcaaactagg gtctttgaat gatgactttt ataaatttat caaaactgga 421 cctttaccca ttgaacaatt caaacaaaga atattggatg ctatatctaa gattgatatt 481 tttacagttg cgatatctaa tccattagat ctggctgttt acttgtgtaa tgaaagagca 541 acttccccac aacttgacga cttcatcccc actattggta aattcttgaa caaaattgat 601 gaaaacgtgg atacattgtt gttgttaata aaagaatact ttgcagatta tattttgctc 661 aaggatgatg ttgatgaaga tgttgttgat gtattgtcta gtatacaaca gaaagtcagt 721 aaacattttg agagtttcaa atttggtgat ttaattaatg aaaacaaccc aaccttccaa 781 gaactttggc aatttgttga aggaaatgac atacaagcat tttatgctgc taggataatc 841 aaacgagcca ttgaagattc gttggaattt gaaagtcttg ctagttttga atcgtttgat 901 attaattata caaagttagt gaaatctcca tttaaatttg tatctatggt tgcaggattt 961 tccaaattct taaactcaaa aaaattaaat cgtattagaa actatgtttt atcagaaatt 1021 ttggcagtca agaaagatga acaaattatt gctgatggaa ttaaatgggt ttcactatca 1081 ttagtatttt tcaatactga gtttggaact gatgtttatc cgattcataa acttacaatg 1141 gtattaaggt tgatcagcga ttggttagat tcttcagttg cttatgacaa tgaatttatt 1201 gatttgcgag tacttatttc ccgctttttg ggttttataa ttcaaaatca aacaaatatt 1261 cctgataatt attatgaatt ggccaataaa gtgttggaaa acaattttga aatcatccaa 1321 cttgaaccaa acagattaga tttgaattat tatactttga aattttatat tctggttatg 1381 gataaaaggg tatctaaatt tgatgaggaa ttaattgata ttttcattaa ttttaatgct 1441 acttgccgta atcaagcaac tatattggta gaacaaacaa ttgcaagggt attaagagaa 1501 tcaccaattg aaatgaaaat cgttcagtct aaaaaggatt caattttcaa attattcaca 1561 gatagtaaat cgatatcggt tcaaagaatt tgtacatggt atttaagaca gattatttta 1621 ttagagcaac aagattttgt tgttgaatat caattatcaa agaatgacga agaaatgcaa 1681 gcaagaatac ctgaagaatt aattaaaatt gttaatcata ctttaggtca tcaagagtat 1741 gaagttttcc aatatatgtg gtcatggata ttgatattgt catatatgga agatatcact 1801 ttgaagatga agaatgaata tatcggacaa cttttacaaa ataaagagct tccaatattg 1861 tttgattttg ttttcgaata tttacacatt gaagatgaga gtttgtatat cattgatagt 1921 ggtaaaccac aagacattga aaacaatgtt atccccaatt atgatttaat tgaaactgga 1981 aaatcagaaa gctctactca tgaacttaag ttgctagcaa cataccttta tttcaaatgt 2041 gctcaacttt gtgggtcaca agtgcaactt tggtttcaag aaattagaga taaacaattc 2101 aaaaacattg tggagaaatt cactgttaaa tttatttcac caatacttgt taaagatatt 2161 aaacaaaatg ttggtaaaga aattggtaaa cttcaacaga atgaagtcaa tataaagatt 2221 ggtaccaatc aaatcaaagc caatatccca gtggaagaag aaaatatatc gatgcgttgg 2281 tctatccctg cgaattatcc tttgagtaat gttgctgttg aaggaccact ttgtgttggg 2341 gttaaagaaa atcaatggaa ggcatggtta ttggcttcac aaaaaataat ttctttaacc 2401 aatggatcaa ttgctaaatc aattgaatta ttttgtaaaa atgtcaattt acatttttca 2461 ggatttgaag attgtgccat ttgttattcg attcttcatc aagattcttc attaccttcg 2521 aaaacttgca caacatgttc aaacaaattc catgcagctt gtttatataa atggttcaag 2581 agttcgggta gttcaacttg tccactttgt cgatcaacat tcaatttcag aaggtag