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LOCUS XM_705403 2238 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_705403 VERSION XM_705403.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2238) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2238) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2238) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2238) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2238) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2238) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_705403.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2238 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2238 /gene="VID27" /locus_tag="CAALFM_C600130CA" /db_xref="GeneID:3647894" CDS 1..2238 /gene="VID27" /locus_tag="CAALFM_C600130CA" /note="Protein similar to S. cerevisiae Vid27p; transposon mutation affects filamentous growth; mutation confers hypersensitivity to toxic ergosterol analog; fungal-specific (no human or murine homolog)" /codon_start=1 /transl_table=12 /product="Vid27p" /protein_id="XP_710495.2" /db_xref="CGD:CAL0000179484" /db_xref="GeneID:3647894" /translation="MNFIKKFIGTTTTDEVASIPSGKLYLTRSKQSPKGAIECLYNDA FASIKKTTSPYYYQLCITKVYQEGEADFNRFDDSEEEYDGEESAPTNDTRRQSKDEWI FPIADELKIHVCEKEDGSRAIAWKDVNGDLGDKFEFVIDEEVRGSEVEAFGMTIYKCL FENKYQTSYAKVNDPNQLKEFIYNPKGELLTFDELKDLNDLEEYETDEYEDCETLPID APKGETKYASTDVDLHLYDTRTGTFILHLAKPDFELKLIDLGNWEYTLYIHGETTRIN TTLSKNMNPTFNYQHLSFIFNDYTVDEGGINACSWLVKFPDYNDMSKFQTVFLGLMYE TLNRRKWGETEEHDYFVDAFSRVSIGDAKDLESEEEEESEEENEGDGPVKWETEKNEK NSSLTVGYAKDRSYVVRGDKIGVFSEDDAGQLNFQTAIINVADLKGKHFSPEKMLLHQ QDQYMIISNPQFDDKALYKMDLTRGKIVEEWEVSKDVPVKSYAPTSKFAQLTDEQTLT GISSNGLFTIDPRLSGTKLVNDKTYKAYKTTNNQFQTLATTDKGYIALGSGKGDIRLF DRLGANAKTALPSLGDPIIGIDVSKDGRWLLATCKTYLLLIDNKISDGQKNAGKLGFT NYFDKDKKPTPRRLALKPEHEAYMVRENGGKQLSFTPAYFNTGRDSKETTIVTSLGKY VVTWSMGKVLLDKENPYLVKRYTQNVIADNFKFGSNNEVIMALQDDVSMVSRRSLANP KNVFK" misc_feature 1..2220 /gene="VID27" /locus_tag="CAALFM_C600130CA" /note="Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]; Region: VID27; COG5167" /db_xref="CDD:227496" misc_feature 1171..2220 /gene="VID27" /locus_tag="CAALFM_C600130CA" /note="VID27 C-terminal WD40-like domain; Region: VID27; pfam08553" /db_xref="CDD:430070" ORIGIN 1 atgaatttta tcaagaagtt tattgggacg actactaccg atgaggttgc gctgattccg 61 tcaggaaagc tttatctcac acgttcaaaa caatccccaa agggggcaat tgagtgtctc 121 tacaatgatg cgtttgcgtc aatcaaaaag acgaccagcc catactacta tcaattgtgt 181 atcaccaaag tttaccaaga gggcgaagct gatttcaata gatttgatga ttcagaagag 241 gagtatgatg gggaggagct ggcacctaca aacgatacca gacgccaatc taaagacgag 301 tggattttcc ccattgccga tgaattgaag attcatgttt gtgagaagga agatgggtcg 361 agagctattg catggaagga tgtgaatggc gatttgggcg ataagtttga gtttgttatt 421 gatgaggagg tgaggggtag tgaagttgaa gcatttggga tgaccatcta caagtgttta 481 tttgaaaaca agtaccaaac aagctatgca aaggtgaatg accccaatca attgaaggag 541 tttatctata atcccaaggg agagttgttg acgtttgatg aactaaagga tttgaatgat 601 ttagaggagt atgagacaga tgagtatgag gattgtgaga ccttgccaat tgacgcgcca 661 aagggagaaa ccaagtatgc tagcactgat gttgacttgc atttgtatga taccaggaca 721 ggaacattta ttttacacct tgccaagcca gattttgagt tgaagttgat agatttgggc 781 aattgggaat atacacttta catccatggc gagactacac ggatcaacac tacgttgagc 841 aagaatatga accccacctt taattaccaa cacttgtcgt ttatttttaa tgattatacg 901 gttgacgaag gcgggatcaa tgcgtgttcg tggttggtca agtttcctga ttataatgac 961 atgtcaaagt ttcaaacggt gtttcttggg ttgatgtatg agacgttgaa tagacggaaa 1021 tggggagaaa cagaggagca cgattatttt gttgatgcat tttctcgggt tagtattggt 1081 gatgccaagg atttggagag tgaggaagaa gaagaaagtg aagaggaaaa cgaaggcgat 1141 ggtcctgtga aatgggaaac tgagaaaaac gaaaagaata gcagtttgac tgtcgggtac 1201 gccaaggata ggtcgtatgt tgttcgtggc gacaagattg gggttttcag tgaagatgat 1261 gcaggtcaac tcaacttcca gacggcaatt atcaatgttg cagacttgaa gggtaagcat 1321 tttagtcccg agaaaatgct tcttcaccag caggaccagt atatgattat ttcgaacccg 1381 cagtttgacg ataaggcctt gtacaagatg gatcttacac ggggaaagat tgttgaggag 1441 tgggaggtgt ccaaagatgt gccagtcaag tcgtatgcgc caacatcaaa gtttgcccaa 1501 ttgactgatg aacagacgtt gacgggtatt tcgtcgaatg ggttgtttac tattgacccg 1561 aggttgagtg gcacaaagtt ggtgaatgac aaaacgtaca aggcatacaa aaccaccaac 1621 aaccagtttc agacattggc aactaccgac aagggctata ttgcgttggg gtccggcaag 1681 ggtgatatca ggcttttcga tagattaggt gctaatgcga agacggcgtt gccgtcgttg 1741 ggggatccga ttattgggat tgatgtgtcg aaggatggta ggtggttact tgccacatgc 1801 aagacgtact tgttgttaat tgataacaag atcagtgatg gtcaaaagaa tgctggcaag 1861 ttggggttta cgaattattt cgacaaggac aagaagccca cgccaagacg acttgcgtta 1921 aagcccgagc acgaagcgta tatggtgaga gagaatggag ggaaacagtt gctgtttacg 1981 cctgcgtatt tcaatactgg ccgtgactct aaagaaacta caatcgtcac ctcgttgggc 2041 aagtatgttg ttacgtggtc gatgggcaaa gtgttgttgg acaaggagaa cccgtatttg 2101 gtgaagaggt acacgcaaaa cgttattgct gataatttca agtttgggtc gaacaacgaa 2161 gtgattatgg cgttacagga tgatgtttct atggtaagta gacgtagttt agctaaccca 2221 aagaatgtat ttaagtaa