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LOCUS XM_443846 3138 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_443846 VERSION XM_443846.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 3138) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 3138) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 3138) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 3138) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 3138) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 3138) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_443846.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3138 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>3138 /locus_tag="CAALFM_C602090CA" /db_xref="GeneID:6335445" CDS 1..3138 /locus_tag="CAALFM_C602090CA" /note="S. cerevisiae ortholog Pxl1 localizes to sites of polarized growth and is required for selection and/or maintenance of polarized growth sites; Hog1p-repressed" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_443846.2" /db_xref="CGD:CAL0000175171" /db_xref="GeneID:6335445" /translation="MMTPQMMSFPNFIREAEQTTRPLDHAFPPLKVEHKYKSVYERAG FDVNKGDNSHRNQSDNKSIGSGMKKRNFSNPRIQHGSTNNSSSSLPQVNTRKAPIPPP QLKTDSSDRVVSPTSSSSSKSSKSSSMNSNFTGTHKSNSSHTTLRNTAEFNGAFEQPL TTGSSTTTFFGENDVQPKPSNGNPMSTVDVGLTAANTNVPTKPHFDNKSMHEHHQIGS NVLSENKNASITTRNEDNSPNRPAFDAHNDQFDFSPSPSQSGKNLKNLKLELNHDNLS DTSSLPDVNQNQKFESSNNPYQSRNSSSDGPVKDIYAQQGYQTQSQPNSQPGSANSGV RFDPRRQRHQPASATSSKFPAQNSPQYPMVHPQQRGPAPYPASPMGTPGHGSQYPPPP PSQQQQRNMSPTSGHSQQRIVSPVSMHSQQRHMSPTGMHHHQQMQNQRPNQPPVPRMG GMHPNPKQPQLPLMTLGGQKQPYYPQSPGAPPLRSQNRPYPQPQGNVHGHPPAHQSGM QQQQQGYPRPQGPPQQTRQRQQTYSQIRDDKLSSALNEFKSDYESHKGSNDSPTTSNT ETDLPSSSSSDLDLYKSTPAKDSLNNTPEINDYRFSYEATKQQQQHQVKPVAATTATN DPSAQFQNFTTQQLAKEGDLNTEYQQFLKQKEIGKRDNYDNRHLSMVSSIISKESNNS NEDEIEKELERQLEKLKMSGSSINLSKVESQGGNGSNAGTDYATPDTTMIIPKFNIQD VDDDPEPQLENVQNELELEEETTRPLTITRTNSTYEDEVAPAQVEEPIAKSVKFTELQ PEAKITSNVPQPQPGYPINDSFGIDDDDNDNGDDEYVKPLSPKNHLIEQELQSMNFQI SQTTESPTTLINQTFESTTIATKDPLPSGTGPCRSCHESISPDAKGQLRAIYSKTGEL SGQWHRKCFQCCYHEGDATDGIKCNIQFNKHVQCYVFDDQPYCFQHYHILNNSICQHC EDGIEGECIENELMEKWHLQCLKCSNCHMGIRQDYYIVNEHDIICHECKTNNNMGLNV QDRIEKRRTRIYNNV" misc_feature <937..>1557 /locus_tag="CAALFM_C602090CA" /note="ARC105 or Med15 subunit of Mediator complex non-fungal; Region: Med15; pfam09606" /db_xref="CDD:312941" misc_feature 2665..2886 /locus_tag="CAALFM_C602090CA" /note="LIM domain in proteins of unknown function; Region: LIM1_UF1; cd09397" /db_xref="CDD:188783" misc_feature order(2665..2667,2674..2676,2755..2757,2764..2766, 2773..2775,2812..2814,2869..2871,2878..2880) /locus_tag="CAALFM_C602090CA" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188783" misc_feature 2905..3060 /locus_tag="CAALFM_C602090CA" /note="LIM is a small protein-protein interaction domain, containing two zinc fingers; Region: LIM; cd08368" /db_xref="CDD:259829" misc_feature order(2905..2907,2914..2916,2968..2970,2977..2979, 2986..2988,2995..2997,3049..3051,3058..3060) /locus_tag="CAALFM_C602090CA" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:259829" ORIGIN 1 atgatgactc cacaaatgat gtcttttcca aatttcatta gagaagcgga acaaactact 61 agaccattag atcatgcctt cccacctttg aaagtagaac acaagtataa aagtgtttac 121 gaaagagccg ggtttgatgt aaataaaggt gacaatagtc accgtaatca aagtgataat 181 aaatcgattg gttcaggtat gaaaaagagg aatttttcca atcctaggat acaacatggc 241 agtacaaaca actcatcatc atcattgcca caggtaaaca ctagaaaggc accaattcct 301 ccaccacaat tgaagactga ttcttcggat cgagtagtgt cccccacttc gtctagttca 361 tctaaatcca gcaaatcgct gtcaatgaat tcaaatttta ctggcacaca taaaagcaat 421 agctctcaca ccactttgag aaatactgct gaattcaacg gtgcatttga acaaccattg 481 acaacagggt cttcaacaac aacatttttc ggtgaaaatg atgtacaacc aaagccttca 541 aatggtaacc caatgtctac tgtcgatgtt gggctaacag cagctaacac taatgttcca 601 acaaagccac attttgacaa caaatcaatg catgaacacc accaaatcgg ctcaaacgta 661 ctatcagaaa ataagaatgc atcaataaca acaagaaatg aggataattc acctaataga 721 cctgcttttg acgcacataa cgaccaattt gatttcagtc cttcacctag tcaaagtggg 781 aaaaacttga agaatttaaa acttgagtta aatcatgata acttgtccga tactagcagc 841 ttgccagatg tgaaccagaa ccaaaagttt gaatcttcaa ataatccata tcaatctaga 901 aactcttcta gtgatggtcc agtaaaagat atttatgcac aacaaggata tcaaacgcaa 961 tcacaaccaa attctcaacc tggatctgct aattcaggag tcagatttga tcctagaaga 1021 cagcgtcatc aaccagcaag tgctacttca agtaaatttc ctgctcaaaa ttcccctcaa 1081 tatccaatgg tacacccaca acaaagggga ccagctcctt atccagcgag tccaatgggc 1141 acgcctggtc atggctctca atatcctccg ccaccaccat cacaacaaca acaacgtaat 1201 atgtcaccca caagtggaca ctcacaacaa cgcattgttt ctcctgtaag tatgcattca 1261 caacaacgtc acatgtcacc aacaggtatg caccaccacc aacaaatgca aaatcaaaga 1321 ccaaatcaac caccagtgcc acgaatggga ggtatgcacc caaatccgaa acaaccacaa 1381 ttgccattaa tgactcttgg tggtcagaaa caaccatact atccacaatc accaggtgcc 1441 ccaccattaa gactgcaaaa tagaccttat ccacagcccc aaggaaacgt gcatggccat 1501 ccaccagctc accaactggg aatgcagcaa caacaacaag gttatccacg cccacaaggt 1561 ccaccacaac agactagaca aagacaacaa acttattctc aaataagaga tgacaagttg 1621 tcatctgcat tgaatgagtt taagagtgac tatgaaagtc ataaaggaag taacgattca 1681 cctacaacat caaatacaga aacagatttg ccaagttctt catcttcaga cttggattta 1741 tataaatcta cgcctgcaaa ggactctttg aataatactc ctgaaatcaa tgattataga 1801 ttttcttatg aagccactaa acaacaacaa cagcatcaag taaaaccagt ggcagcaaca 1861 accgccacca atgatccttc tgcacaattc caaaatttca ctacacaaca attggccaaa 1921 gaaggtgatt taaataccga atatcaacaa tttttgaaac aaaaagaaat tggtaaacgt 1981 gataattatg ataatcgtca tttatctatg gtcagttcta taatcagtaa agaatccaat 2041 aacagtaatg aggatgaaat tgaaaaggaa ttagaaagac aattggaaaa gttgaaaatg 2101 tcaggcagta gtattaatct tagtaaagtt gaatcacaag gtggtaatgg tagtaatgct 2161 ggtactgatt atgctacacc tgatactact atgataattc ccaaatttaa tatccaagat 2221 gttgatgacg atcctgaacc acaattggag aatgtacaaa atgaattaga attagaagaa 2281 gagactacta gaccattgac tattactcgt acaaattcaa cctatgaaga tgaagtggca 2341 ccagcacaag tggaagaacc aattgctaaa agtgttaaat tcactgaatt acaacctgaa 2401 gcaaaaatca catctaatgt tccacaacct cagcctggtt atccaatcaa tgattcattt 2461 ggaattgatg atgatgataa tgataatgga gatgatgaat atgttaaacc attatcacct 2521 aaaaatcatt taattgaaca agaattacaa agtatgaatt tccaaatatc acaaaccact 2581 gaatcaccaa cgacattaat caatcaaaca tttgaatcca ccaccatcgc caccaaggac 2641 ccattaccat caggtactgg accttgtaga tcgtgtcatg aatctatttc tcctgatgcc 2701 aaaggtcaat tacgtgccat ttattctaaa actggtgaat tatcaggtca atggcatagg 2761 aaatgtttcc aatgttgtta tcatgaaggt gatgctacag acggcattaa atgtaatatt 2821 caattcaata aacatgttca atgttatgtt tttgatgatc aaccatattg tttccaacat 2881 tatcatattt taaataattc aatttgtcaa cattgtgaag acggaattga aggagaatgt 2941 atcgaaaatg aattgatgga aaaatggcat ttacaatgtt tgaaatgttc aaattgtcat 3001 atggggatta gacaagatta ttatattgtt aatgaacatg atattatatg tcatgaatgt 3061 aaaacaaata ataatatggg attaaatgtt caagatagga ttgaaaaaag aaggacaaga 3121 atttataata atgtgtaa