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LOCUS XM_070219360 2884 bp mRNA linear INV 09-DEC-2024 (Usp2), transcript variant X7, mRNA. ACCESSION XM_070219360 VERSION XM_070219360.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2884 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2884 /gene="Usp2" /note="Ubiquitin specific protease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058857" CDS 176..1123 /gene="Usp2" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase Usp2 isoform X7" /protein_id="XP_070075461.1" /db_xref="GeneID:108058857" /translation="MNSVIQCLSHTQELTRFLRSHHGSRSSSTKDQQILHEFAKLIQE MWTSNVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFLRFFLDSLHSALNSGVKGETLS IDDNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSV PLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLK RFSETRWSKLSNIVEFPTSDSELNMGSYGANSNSNVHYSLYAISNHMGSTAGGHYVAL CKHPASRKWHEFNDNIVSDALSENHLVSSSAYILFYERA" misc_feature <176..>670 /gene="Usp2" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 392..1114 /gene="Usp2" /note="A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19R; cd02674" /db_xref="CDD:239139" polyA_site 2884 /gene="Usp2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taatagcatt cccatttctc taaaagtcta tcgaaattct cagtgaaagc tcaaataaaa 61 taaaaaaaaa attgaaaaag tatttatata gagaagaacg ttgaagggga gtcataagaa 121 gactgaggat cgagcgagtc tgtgcggtct gcgaaacatc gggaacactt gcttcatgaa 181 ctctgtcatc cagtgtctga gccacactca ggagctgaca cgcttcttgc ggtcgcacca 241 tggctcccgc tcgtcctcca ccaaggatca gcagatactc cacgaatttg ccaaacttat 301 ccaggagatg tggacgtcga atgtgcacac tgtgacgccc atggaactga agcgggcctt 361 ctccaccaag caccgcatgt atagcgacta taaccaacag gatgcgcagg agttcctgcg 421 tttcttcctc gactcgctgc actcggccct aaactcgggc gtcaagggtg agacgctcag 481 cattgacgat aatctcagtg acaataagaa ggcagacctg acctgggaat ggtatacgcg 541 gcacgagaac tcgctggtgc gcgacctctt tgtgggtcag cttaaaagca ccctgaagtg 601 caccacctgc ggcaacacca gcgtcacctt cgatccgttc tgggatctaa gcgtaccgct 661 gccgtcctcg tcgcgttgta agctggaggc ctgtctcgac ctctttatcc gtgaggaggt 721 actcgacggc gatgagatgc ccacgtgcgc caagtgcaag acgcggcgga aatgcaccaa 781 gagcttcacc attcagcgtt tccccaaata tctagttata cacctaaagc gcttttcgga 841 aacgcgctgg agcaagctgt ccaacatcgt tgagttcccc acatcggaca gcgagctgaa 901 catgggctcc tatggcgcca actctaactc gaatgtgcat tactcgctct atgcgatatc 961 caatcatatg ggctcaacag ctggcggtca ttatgtggct ctttgcaagc atcccgcatc 1021 ccgcaagtgg catgagttca atgataatat cgtcagcgat gccttgtccg aaaaccatct 1081 cgtttcatcc agtgcctata ttcttttcta cgagcgtgcg taaggcccaa ttcgtgccct 1141 acggcaaccg tcaggtgcag tgttgatgac gatgtcccag atccagatgt cccggcgcac 1201 tcctcagatc gggatggaaa ccaggatgac catgggagcg ggatgagagc gagaggaaat 1261 ggaacaacca acaaacgaac tctaagaaac gcttcgtaga attgcataca aacaaattta 1321 cttaatttaa ctcaacttaa aagcaaaaca gaactaactc ctaacttaaa gcagaaacca 1381 aaagaaaaac ggaataaaag tgcatacaaa acgaggatta atgtacatat aaaaaacgaa 1441 cttcgatggc ttaacgaaac aagtaaaaga acaataatta aaatccgacg aaaaacaatg 1501 aatctgtgca ataaacaact ttcggcaaac caaaaaacct caagccccag gataagtgca 1561 agagatacta atactaacta gtggcagaat atacttttgt aaggacacac atagcaatca 1621 gcggcagcaa cgatacaatg tttcactatt tctctctttt taagtgttat ttataaaaac 1681 taaattttca atttacatcg ccccactttc cttgtctctt tttcgcctgt cattctatct 1741 ctctcttact cacattggtt tgccgaacga tagatagtgt tctgtggttg tgtgtaaaaa 1801 aaataaacaa aaaatgaaaa gtgggagagg aaaactaatt atatatttaa aattcgtctt 1861 gtgcaatata tttcataaaa atagaaaaac aataactgca ataaatataa ataaattcaa 1921 actaaagacg attaaaacca aacaaaacgc aatcgcacca caaaattcac actagctaag 1981 agaaatggct ttttaacaac taaaaaagaa agtaatatta attaattgat aacgagcaac 2041 aaattgaatg gaagggggtg cgaagtgaag ctgaaatctg cattgtgaaa acgtacttat 2101 gataaatgct agtagtaaaa tttaaaaaat tgaagcgatc agcagcaaca acaccaaaaa 2161 accattgtta ttctttagcc aagacaccaa tcaaccaaca aaaccatcca gcccatataa 2221 aaaagggaaa ctccccaggg cacaaaagac cgttatgaag ttcgtttcaa atttatgaag 2281 ttttttgagt gtttttttgt taggcttggg taaagctacc taaactagtc ttaaaaacaa 2341 aagagtttag tatgagggct actaaacgaa acctgttttt atttgtttga ttttatgcgt 2401 attttgtagt ttaaggctag cggttttcca tcacctcagc aatccctttt atacttgcta 2461 tatatttttt gttgcttatt ttgttttata cctacatata ttatgtaatt tatttattta 2521 ttgtatctat gtaaattata taaagaacac ggacacctac acttacatct atactctgcg 2581 aaacaggatg tgtacataat gtagcttgtt tccgacatcc aaaagcagct acagaaaaac 2641 taaaacaaca tctacacggc accaaaatct aaatgaaaga taataaaaat atacaagaca 2701 cattatttat ttatttgtaa aaaaaaatgc aactcctata ttttttccgg cttaaatatt 2761 agtttcaatt aaaattgttg gatattttac taacgttaaa gaaaaccaaa aacattaaaa 2821 aaaagaaaaa atcaccaaga aaaaaatgca aaaataaacg caaaaataaa attgaaaaat 2881 ttaa