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LOCUS XM_070219359 2907 bp mRNA linear INV 09-DEC-2024 (Usp2), transcript variant X6, mRNA. ACCESSION XM_070219359 VERSION XM_070219359.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2907 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2907 /gene="Usp2" /note="Ubiquitin specific protease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058857" CDS 136..1146 /gene="Usp2" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase Usp2 isoform X6" /protein_id="XP_070075460.1" /db_xref="GeneID:108058857" /translation="MQAHASQLGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHG SRSSSTKDQQILHEFAKLIQEMWTSNVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFL RFFLDSLHSALNSGVKGETLSIDDNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKST LKCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTR RKCTKSFTIQRFPKYLVIHLKRFSETRWSKLSNIVEFPTSDSELNMGSYGANSNSNVH YSLYAISNHMGSTAGGHYVALCKHPASRKWHEFNDNIVSDALSENHLVSSSAYILFYE RA" misc_feature <136..>693 /gene="Usp2" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 169..1137 /gene="Usp2" /note="A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19R; cd02674" /db_xref="CDD:239139" misc_feature order(178..180,193..195,1012..1014,1066..1068) /gene="Usp2" /note="active site" /db_xref="CDD:239139" polyA_site 2907 /gene="Usp2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctatcgaaat tctcagtgaa agctcaaata aaataaaaaa aaaattgaaa aagtatttat 61 atagagaaga acgttgaagg ggagtcataa gaagactgag gatcgagcga gtatgataga 121 ttcttccgtt agcgaatgca agcccacgca tcccaattgg gtctgtgcgg tctgcgaaac 181 atcgggaaca cttgcttcat gaactctgtc atccagtgtc tgagccacac tcaggagctg 241 acacgcttct tgcggtcgca ccatggctcc cgctcgtcct ccaccaagga tcagcagata 301 ctccacgaat ttgccaaact tatccaggag atgtggacgt cgaatgtgca cactgtgacg 361 cccatggaac tgaagcgggc cttctccacc aagcaccgca tgtatagcga ctataaccaa 421 caggatgcgc aggagttcct gcgtttcttc ctcgactcgc tgcactcggc cctaaactcg 481 ggcgtcaagg gtgagacgct cagcattgac gataatctca gtgacaataa gaaggcagac 541 ctgacctggg aatggtatac gcggcacgag aactcgctgg tgcgcgacct ctttgtgggt 601 cagcttaaaa gcaccctgaa gtgcaccacc tgcggcaaca ccagcgtcac cttcgatccg 661 ttctgggatc taagcgtacc gctgccgtcc tcgtcgcgtt gtaagctgga ggcctgtctc 721 gacctcttta tccgtgagga ggtactcgac ggcgatgaga tgcccacgtg cgccaagtgc 781 aagacgcggc ggaaatgcac caagagcttc accattcagc gtttccccaa atatctagtt 841 atacacctaa agcgcttttc ggaaacgcgc tggagcaagc tgtccaacat cgttgagttc 901 cccacatcgg acagcgagct gaacatgggc tcctatggcg ccaactctaa ctcgaatgtg 961 cattactcgc tctatgcgat atccaatcat atgggctcaa cagctggcgg tcattatgtg 1021 gctctttgca agcatcccgc atcccgcaag tggcatgagt tcaatgataa tatcgtcagc 1081 gatgccttgt ccgaaaacca tctcgtttca tccagtgcct atattctttt ctacgagcgt 1141 gcgtaaggcc caattcgtgc cctacggcaa ccgtcaggtg cagtgttgat gacgatgtcc 1201 cagatccaga tgtcccggcg cactcctcag atcgggatgg aaaccaggat gaccatggga 1261 gcgggatgag agcgagagga aatggaacaa ccaacaaacg aactctaaga aacgcttcgt 1321 agaattgcat acaaacaaat ttacttaatt taactcaact taaaagcaaa acagaactaa 1381 ctcctaactt aaagcagaaa ccaaaagaaa aacggaataa aagtgcatac aaaacgagga 1441 ttaatgtaca tataaaaaac gaacttcgat ggcttaacga aacaagtaaa agaacaataa 1501 ttaaaatccg acgaaaaaca atgaatctgt gcaataaaca actttcggca aaccaaaaaa 1561 cctcaagccc caggataagt gcaagagata ctaatactaa ctagtggcag aatatacttt 1621 tgtaaggaca cacatagcaa tcagcggcag caacgataca atgtttcact atttctctct 1681 ttttaagtgt tatttataaa aactaaattt tcaatttaca tcgccccact ttccttgtct 1741 ctttttcgcc tgtcattcta tctctctctt actcacattg gtttgccgaa cgatagatag 1801 tgttctgtgg ttgtgtgtaa aaaaaataaa caaaaaatga aaagtgggag aggaaaacta 1861 attatatatt taaaattcgt cttgtgcaat atatttcata aaaatagaaa aacaataact 1921 gcaataaata taaataaatt caaactaaag acgattaaaa ccaaacaaaa cgcaatcgca 1981 ccacaaaatt cacactagct aagagaaatg gctttttaac aactaaaaaa gaaagtaata 2041 ttaattaatt gataacgagc aacaaattga atggaagggg gtgcgaagtg aagctgaaat 2101 ctgcattgtg aaaacgtact tatgataaat gctagtagta aaatttaaaa aattgaagcg 2161 atcagcagca acaacaccaa aaaaccattg ttattcttta gccaagacac caatcaacca 2221 acaaaaccat ccagcccata taaaaaaggg aaactcccca gggcacaaaa gaccgttatg 2281 aagttcgttt caaatttatg aagttttttg agtgtttttt tgttaggctt gggtaaagct 2341 acctaaacta gtcttaaaaa caaaagagtt tagtatgagg gctactaaac gaaacctgtt 2401 tttatttgtt tgattttatg cgtattttgt agtttaaggc tagcggtttt ccatcacctc 2461 agcaatccct tttatacttg ctatatattt tttgttgctt attttgtttt atacctacat 2521 atattatgta atttatttat ttattgtatc tatgtaaatt atataaagaa cacggacacc 2581 tacacttaca tctatactct gcgaaacagg atgtgtacat aatgtagctt gtttccgaca 2641 tccaaaagca gctacagaaa aactaaaaca acatctacac ggcaccaaaa tctaaatgaa 2701 agataataaa aatatacaag acacattatt tatttatttg taaaaaaaaa tgcaactcct 2761 atattttttc cggcttaaat attagtttca attaaaattg ttggatattt tactaacgtt 2821 aaagaaaacc aaaaacatta aaaaaaagaa aaaatcacca agaaaaaaat gcaaaaataa 2881 acgcaaaaat aaaattgaaa aatttaa