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LOCUS XM_070219357 4907 bp mRNA linear INV 09-DEC-2024 (Usp2), transcript variant X2, mRNA. ACCESSION XM_070219357 VERSION XM_070219357.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4907 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4907 /gene="Usp2" /note="Ubiquitin specific protease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058857" CDS 312..3146 /gene="Usp2" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase Usp2 isoform X2" /protein_id="XP_070075458.1" /db_xref="GeneID:108058857" /translation="MMLDIKKTRGFHKIPQASKLQTATGATSSVAATLGASATEVPSP GGSALSGRGTASLATRLKNPGPGKHSTVPEASVAVVDRTHAALAVAKYGRGGGVATQV RSTTASTANSQSNPVRAANQRYFLVSSYKDPTFLKAECELAHAQVAASKVKSTSQPHR RSRAGEDSRNNNQNGSRAPALVDMRRTPMFNGNQQPTTTGSSSTTINNTTTTSNGVLK YSARSTTATATAAAATSTSTRSYGKLKPLNNNQSTAGSAMMNGHATNNNNNSTNLNNG GNNNMQRQQDQHDDISYIDSDDPPATSGPAGGGGSTAKASICYFKPITPPMQLRHQQT NKVQQQEQQPASSKTASHRYPRPKSTIIASAQSNFAASYEKFSGALYRQANGELNPES RSNSNARRYGIDSLSIKASIEKFNNLSGQKRQAPSSSAGLAGSGSGTGSGSGVEAGTS RSNHASQAGGSSGNLQQRYSSDLDNIRVAAGYSSSLTRAAYRTTGTMNSVSTPVAATS GGGGAGTAVVSPINKVTVRGAHSSRQANECLAIATKTAARSGTGSSSSARSVLPPMTP TSNRYWDRDRDSGTSRNSVSTSSALNSSSLKHNSDDGYKSASSSRDEKSEGLCGLRNI GNTCFMNSVIQCLSHTQELTRFLRSHHGSRSSSTKDQQILHEFAKLIQEMWTSNVHTV TPMELKRAFSTKHRMYSDYNQQDAQEFLRFFLDSLHSALNSGVKGETLSIDDNLSDNK KADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSRCK LEACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFSETRWSK LSNIVEFPTSDSELNMGSYGANSNSNVHYSLYAISNHMGSTAGGHYVALCKHPASRKW HEFNDNIVSDALSENHLVSSSAYILFYERA" misc_feature <2151..>2693 /gene="Usp2" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 2169..3137 /gene="Usp2" /note="A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19R; cd02674" /db_xref="CDD:239139" misc_feature order(2178..2180,2193..2195,3012..3014,3066..3068) /gene="Usp2" /note="active site" /db_xref="CDD:239139" polyA_site 4907 /gene="Usp2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acttaaaaaa aaaccaactt aagtccaact aaacgccagg ctaactaaca atactcctaa 61 ctaaaataaa accccctaag aaaccattat aagatcatca aaaaatccat ttgcttagga 121 tatatgtata gtgcgaggca cgacaggatc atccggttag tcgagagtag tttattcctg 181 gcaggcggcg aggaaacaaa caaacacaac acaaaatctc gtatccactt aaccgtaggc 241 aggcaacaaa aataaacgct agagaaccaa ctgcagcaga gagaaaagga gtgcggtgac 301 catcccgtcg aatgatgtta gacattaaga agaccagagg attccacaag attccacagg 361 catccaaatt gcagacagcg acgggagcaa catcatcggt agcagcaaca ttgggagcaa 421 gtgcaacaga ggtgccatca ccaggaggat ctgccttatc gggacgggga actgctagcc 481 tagccactcg tctgaaaaac ccagggccgg gcaagcactc gacagttcct gaagcctcgg 541 tggccgtcgt cgataggact cacgccgccc tggcggtagc caaatacggc agaggcggcg 601 gagtagcaac ccaggtccgc tccacgacgg cgagcacggc gaacagtcaa tccaatccgg 661 tgcgggctgc caatcagcgt tacttcttag tgtccagcta caaggatccc acattcctga 721 aggccgaatg cgagttggcc cacgcacagg tggcagccag caaagtgaaa agcacgtcgc 781 agccccacag acggagtcga gcaggtgagg actcgaggaa caataaccaa aacggtagtc 841 gggcaccggc gctggttgat atgcgacgca cgcccatgtt caatggcaat cagcaaccaa 901 caaccaccgg cagcagcagc accaccatca acaacaccac caccaccagc aacggagttc 961 tcaagtacag tgcccgctcc acgacagcaa cagcaacagc agcagcagca acttccacgt 1021 ctaccaggag ctacggcaag ctgaagccgc tgaataacaa ccaatcaacc gccggatcag 1081 ctatgatgaa cggccacgcc actaacaata ataacaacag cactaacctc aacaacggcg 1141 gcaataacaa catgcagcgt caacaggacc aacacgacga cattagctac atagacagcg 1201 atgatccgcc ggcaacaagt ggcccagcag gaggcggggg atcgacagcc aaggcgagca 1261 tatgttactt caagcccatc actcccccga tgcagctgcg gcaccagcaa acaaataaag 1321 tgcagcaaca ggagcagcaa cctgctagct cgaagacagc cagccatcgc tatccacggc 1381 ccaagtccac aattatagca tcggcccaat cgaacttcgc agccagctat gagaagttca 1441 gtggtgctct ctatcgacag gccaatggcg agttgaaccc ggagagcagg agtaacagca 1501 atgccaggcg atatggcata gattccttga gtatcaaggc ctccatagag aagttcaaca 1561 atctcagtgg gcagaagagg caagctccga gctcttcagc gggtctggca gggtctggca 1621 gtgggacagg ctcaggctca ggagtcgagg ccgggaccag tcgcagcaat cacgcatcgc 1681 aggcaggcgg gagcagcggc aacctgcagc aacgctacag cagcgacctg gacaacatca 1741 gagtggctgc gggctatagt agttctctaa ccagagcagc ctatcgtact acgggcacga 1801 tgaatagtgt tagcacgccg gtggcggcca catctggagg aggaggagcc ggcactgcgg 1861 tggtttcgcc cattaacaag gtgacggtga gaggagccca cagcagcagg caggcaaacg 1921 aatgcctggc catagccacc aagacggcgg caagaagcgg cactgggagt agcagcagtg 1981 ctcggagcgt gctgccgccc atgacaccca cgtcgaatcg ctactgggat cgggatcggg 2041 acagcggcac tagccgcaac agcgttagca cctcctccgc tctcaactcg tcatccctga 2101 agcacaattc ggatgatggc tacaagagcg cctcgtcgtc gcgtgatgag aagtctgaag 2161 gtctgtgcgg tctgcgaaac atcgggaaca cttgcttcat gaactctgtc atccagtgtc 2221 tgagccacac tcaggagctg acacgcttct tgcggtcgca ccatggctcc cgctcgtcct 2281 ccaccaagga tcagcagata ctccacgaat ttgccaaact tatccaggag atgtggacgt 2341 cgaatgtgca cactgtgacg cccatggaac tgaagcgggc cttctccacc aagcaccgca 2401 tgtatagcga ctataaccaa caggatgcgc aggagttcct gcgtttcttc ctcgactcgc 2461 tgcactcggc cctaaactcg ggcgtcaagg gtgagacgct cagcattgac gataatctca 2521 gtgacaataa gaaggcagac ctgacctggg aatggtatac gcggcacgag aactcgctgg 2581 tgcgcgacct ctttgtgggt cagcttaaaa gcaccctgaa gtgcaccacc tgcggcaaca 2641 ccagcgtcac cttcgatccg ttctgggatc taagcgtacc gctgccgtcc tcgtcgcgtt 2701 gtaagctgga ggcctgtctc gacctcttta tccgtgagga ggtactcgac ggcgatgaga 2761 tgcccacgtg cgccaagtgc aagacgcggc ggaaatgcac caagagcttc accattcagc 2821 gtttccccaa atatctagtt atacacctaa agcgcttttc ggaaacgcgc tggagcaagc 2881 tgtccaacat cgttgagttc cccacatcgg acagcgagct gaacatgggc tcctatggcg 2941 ccaactctaa ctcgaatgtg cattactcgc tctatgcgat atccaatcat atgggctcaa 3001 cagctggcgg tcattatgtg gctctttgca agcatcccgc atcccgcaag tggcatgagt 3061 tcaatgataa tatcgtcagc gatgccttgt ccgaaaacca tctcgtttca tccagtgcct 3121 atattctttt ctacgagcgt gcgtaaggcc caattcgtgc cctacggcaa ccgtcaggtg 3181 cagtgttgat gacgatgtcc cagatccaga tgtcccggcg cactcctcag atcgggatgg 3241 aaaccaggat gaccatggga gcgggatgag agcgagagga aatggaacaa ccaacaaacg 3301 aactctaaga aacgcttcgt agaattgcat acaaacaaat ttacttaatt taactcaact 3361 taaaagcaaa acagaactaa ctcctaactt aaagcagaaa ccaaaagaaa aacggaataa 3421 aagtgcatac aaaacgagga ttaatgtaca tataaaaaac gaacttcgat ggcttaacga 3481 aacaagtaaa agaacaataa ttaaaatccg acgaaaaaca atgaatctgt gcaataaaca 3541 actttcggca aaccaaaaaa cctcaagccc caggataagt gcaagagata ctaatactaa 3601 ctagtggcag aatatacttt tgtaaggaca cacatagcaa tcagcggcag caacgataca 3661 atgtttcact atttctctct ttttaagtgt tatttataaa aactaaattt tcaatttaca 3721 tcgccccact ttccttgtct ctttttcgcc tgtcattcta tctctctctt actcacattg 3781 gtttgccgaa cgatagatag tgttctgtgg ttgtgtgtaa aaaaaataaa caaaaaatga 3841 aaagtgggag aggaaaacta attatatatt taaaattcgt cttgtgcaat atatttcata 3901 aaaatagaaa aacaataact gcaataaata taaataaatt caaactaaag acgattaaaa 3961 ccaaacaaaa cgcaatcgca ccacaaaatt cacactagct aagagaaatg gctttttaac 4021 aactaaaaaa gaaagtaata ttaattaatt gataacgagc aacaaattga atggaagggg 4081 gtgcgaagtg aagctgaaat ctgcattgtg aaaacgtact tatgataaat gctagtagta 4141 aaatttaaaa aattgaagcg atcagcagca acaacaccaa aaaaccattg ttattcttta 4201 gccaagacac caatcaacca acaaaaccat ccagcccata taaaaaaggg aaactcccca 4261 gggcacaaaa gaccgttatg aagttcgttt caaatttatg aagttttttg agtgtttttt 4321 tgttaggctt gggtaaagct acctaaacta gtcttaaaaa caaaagagtt tagtatgagg 4381 gctactaaac gaaacctgtt tttatttgtt tgattttatg cgtattttgt agtttaaggc 4441 tagcggtttt ccatcacctc agcaatccct tttatacttg ctatatattt tttgttgctt 4501 attttgtttt atacctacat atattatgta atttatttat ttattgtatc tatgtaaatt 4561 atataaagaa cacggacacc tacacttaca tctatactct gcgaaacagg atgtgtacat 4621 aatgtagctt gtttccgaca tccaaaagca gctacagaaa aactaaaaca acatctacac 4681 ggcaccaaaa tctaaatgaa agataataaa aatatacaag acacattatt tatttatttg 4741 taaaaaaaaa tgcaactcct atattttttc cggcttaaat attagtttca attaaaattg 4801 ttggatattt tactaacgtt aaagaaaacc aaaaacatta aaaaaaagaa aaaatcacca 4861 agaaaaaaat gcaaaaataa acgcaaaaat aaaattgaaa aatttaa