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LOCUS XM_070219352 5020 bp mRNA linear INV 09-DEC-2024 (LOC108059396), transcript variant X3, mRNA. ACCESSION XM_070219352 VERSION XM_070219352.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5020 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5020 /gene="LOC108059396" /note="uncharacterized LOC108059396; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108059396" CDS 219..2093 /gene="LOC108059396" /codon_start=1 /product="uncharacterized protein isoform X2" /protein_id="XP_070075453.1" /db_xref="GeneID:108059396" /translation="MPKAKGSSSLGSKGLSRGLSAAVAVPRGSAGPSGGSAVRQQEAK EKQPGKKKKDSLAAKESEVKKKEPLKKEPVKNEPLKTEPVKDATVPNESTPISSIPAI DKLRRFCFIGATEEPVYATPTLDLAVETSFASLQDLCSQVTEGELAECLASVLGSGPN AEHLPRPDEPLLILAVYLTTRDDEKQRKLVRSRFADLVTSESDLMLFVQLVKRVQKLL DRKTPFNRTVRKAILDWYGKQSLDRLLHLWSVGDGTRWSAHRDLLHRCHFRDGDFRPE IMAALRLLSSSPKELSQWPSFLTPLSSNRGIIEGVVKLRLLQDPEQALPIVKKLALSW EHVPLQLLNDPGLAKYLVPRMSYEQLLRSWPRLSRLHHQVRPFAAQLLDEKKLKAGNV PPVRLLLEDMRLRKPRKCDCRVILMQRASFLHSVYEASFGQNKALGRRLHITLNLEQH YLGKYLSGRCRSLKYLDALVAMAFGYFRSDPKVTVQFWHDRSGQLKTLPWTKEMSVAE ATACCENQKVLKIKQSLTDILDRALEDEKNTYDVFLVLVPGAGRGNQANSSKGLAALM DEYREKRSSNAKFIILSLRQHHRSMLYSGARNENLLELCSLDEHTPRLINAFARRKFY " misc_feature 528..1415 /gene="LOC108059396" /note="TROVE domain; Region: TROVE; pfam05731" /db_xref="CDD:461724" polyA_site 5020 /gene="LOC108059396" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccatcacaa cgcctcctac tatcgataac aaaacataca aattgttttc attgcaaaat 61 tatgtataaa acttgctaag tcgcaaataa ggacaaagag agctgcttca ggagacacgg 121 tgggcgagtc ggatcaaaca gggcgtggca aatcgagcta tcaggcctgt caatccccag 181 aaagtgcggt gtgagcgtaa aatgcaataa tcgctgccat gccaaaggcc aagggatcaa 241 gctcccttgg atcgaaggga ttatcccggg gattatctgc ggcagtcgcg gtgcccaggg 301 gatcggcggg accgtcggga ggatcggcgg tgcggcagca ggaggccaag gagaagcagc 361 cgggcaagaa gaagaaggac tcgctggctg ccaaggaatc tgaagttaag aaaaaggagc 421 ccttgaagaa agagccagta aagaacgagc ccttgaagac agagcccgtt aaagatgcaa 481 cagtgcccaa tgagtccact cccatttcct ccatcccggc gattgacaag ctgcgccgct 541 tctgtttcat cggcgccacg gaagagcctg tctatgctac tcccacgctg gacctcgccg 601 tagagaccag ctttgcgtct ctgcaggacc tctgctccca agtgaccgag ggcgagctgg 661 ccgagtgcct ggcgagtgtc ctgggcagcg gaccgaatgc ggagcacctg ccgcgccccg 721 acgagccgct cctcatcctg gccgtctatc tcaccacgcg cgacgacgaa aagcaacgca 781 aactggtgcg cagccggttc gccgacctgg tgaccagcga atcggacctc atgctctttg 841 ttcagctggt gaagcgagtc cagaagctgc tcgaccgcaa gacgcccttc aatcgcacgg 901 tgcgcaaggc catcctcgac tggtacggca agcaatcgct ggaccgcctg ctccacttgt 961 ggtcggtggg cgacggtacc cgctggtcgg cgcatcgcga cctgctgcac cgctgccact 1021 tccgggacgg cgactttcgg ccggagatca tggctgccct gcggctgctc tcgtcgtcgc 1081 ccaaggagct gtcgcaatgg cccagcttcc tgacgccgct gagcagtaac cgcggcatta 1141 tcgagggcgt ggtgaagctg cgactcctgc aggatcccga gcaggctctg cccattgtca 1201 agaagctagc gctgagctgg gagcacgtgc cgctgcagct gctcaacgat cccgggctgg 1261 ccaagtatct cgtaccacgc atgagctacg agcagctcct ccgcagctgg ccgcgtctct 1321 cgcgactgca tcaccaggtg cgaccctttg ccgcgcagct gctggacgag aagaagctca 1381 aggcgggcaa tgtgccgccc gtgcgcctgc tgctggagga catgcgtctg cggaagccca 1441 ggaagtgcga ctgcagagtg attcttatgc aaagggcgag ttttctgcat agcgtttacg 1501 aggcatcctt tggccagaac aaggcgctcg gccggcggct gcacatcacc ctcaatctgg 1561 agcagcacta cctgggcaaa tacctttccg gtcgctgccg ttcgcttaaa tacttagatg 1621 ccctggtggc catggccttt ggctacttcc gcagcgatcc caaggtgacg gtgcagttct 1681 ggcacgaccg cagtggccag ctgaagacgc tgccctggac aaaggagatg agcgtggcag 1741 aggccacggc ctgctgcgag aatcagaagg tgctgaagat caagcagtcg ctgacggaca 1801 ttttggacag agcgctggag gatgagaaga acacgtacga tgtgtttctg gtgctggtgc 1861 cgggtgctgg gcgaggaaat caggcgaata gttccaaggg cttggctgct ttgatggacg 1921 agtaccgcga gaagcggagc tccaatgcca aattcattat actaagcctg cggcagcacc 1981 accgctccat gttgtactcc ggcgcacgaa acgaaaacct gctggagctg tgcagcctgg 2041 acgagcacac gccgcgcctg atcaacgcct tcgctcgcag gaagttctac tagaagagcc 2101 ggaggagcag cctctcgaat cccaattaat cgcaccgcaa agcagttcca tttgttgaag 2161 gacggtggcc ctcggttcgt tgccatcggc catctctctc gctttcatag acgcccgggc 2221 gctcgtccac ccactcccca cgttccgaat agctttcatg taacatatac gcgtaggtcc 2281 ttggcgtgta atcatcgtag agccaggcca acttaatgct acatacttat gtactaataa 2341 tggtaatagt tacaccccgg aatccagaat tcagaaacca gaattgcaat cgggttagtt 2401 agatattttt aacgctcgtt ttgtgtaatc acctttgtat tcgtatttgt atttgtacta 2461 gatttggtgg atttattttt tgaaatcaaa ctgaatcaac tgaactgaac tcaatctaaa 2521 ttcaatttgg attaaaaaca atctcaaagc aaaagcaaac gcaagcgcaa acaacaaaca 2581 aagaaaagaa aaggaaagaa aagaaaagaa aaaccgacaa aaaaagaaca acaaacaaat 2641 tgccttacaa acaaaaatgt tagtaaaact ttcattttag tttagacttt ttcaaaaatc 2701 gaatactgga actgaaactg aaacacaaat tatggcattt agataaagtt aaagttaaat 2761 gtaaactaat catatggcct atgtattgaa tattgaatat tattctaacg taactttaaa 2821 atagtccaag tcaaagcaat aatcaccaat cactaagcga atccagttat agcctcagat 2881 cgatcataga tttatgttgt gctcgaatag aatcgaatta aattagctaa atagtcgaaa 2941 cgcgtacaag gcaaaagatg ttaaggaaat ggaaaatgaa aaggaaaact cccaatgtgc 3001 catacacaca ccattaacag aaacagaaac acacacacac acaccccata cactcgatca 3061 gtatatttat taggattgtg aggaaaaacg ccgaaccgaa accacataga gaacaataac 3121 gaaacgacga gcaaacgcta ccaatttgac taaaattagt taagtgaaat tatactcaaa 3181 ttacgattaa attacattta cttgtataga aagcctagca accaatttgg aaggtaaaca 3241 aaaaatccaa ccgaacatag ggaaatcgaa acgaaaacaa aaacgaaaat taattaacca 3301 gaaatcgaaa cgatacgaat gaaaatagga aatatttcca cggacatttc taaccaaatg 3361 tttccacacg cgtctgtgaa gtaaaccgtt gtgatcgctt taaattttga tttaaacaaa 3421 acataaatac aaaactgcaa actactgaat acaaaaaaca agatacaaaa tacaaaatac 3481 agaagagccg gaacacaaac ggcaacaggc ggctataagt tattctatat agtttgtgaa 3541 ctcaaaatca gtaggatcgt aaccgaaaag tacctataca acaaaagcta aactaaaact 3601 gaaactgata ctgcagagcc aaccaattga actccaaaaa tccagcagaa ctacacacaa 3661 gaagtattca actaacccgc gctgcctgag aagaatcgag gataaggtag atcgaaggat 3721 cgggattcga aggaaggagg aatcttcgga ctaccgcaga atgtatacac tttacagatt 3781 gtcgaggaaa gatctgacct ctgcattgat ttgaatttat tgttactaat gctaaggctc 3841 atttgtgccc tcttcgaaag aggaattaac ataagaaaaa ttggaagaga cccaaacaaa 3901 atactttttt ccccctaatc tgtggtctct tcttataatt ttattttaca actacttaag 3961 tttaagtttc aaaagtttat ttatcggttt aagcacacaa aattttgtgg tccgaagtat 4021 atatatgtgt aagagaaatc tcgacgtatt aatttacgca ttccaatttg aaaacgtatc 4081 attatttttg tattattaga cctaaaacga taaaccaaat atggtcatta tttataatca 4141 ttttttttta atagcccact aacaattttt tttaaatggg ctgatttatt tttgctaatt 4201 attatattgg ggccatacct aaaaccatta ttgttactat ataagtaaat acttcagttt 4261 gtaaagtgta tcgcacagag aaacgcaaac caaacagtta aaaccgtaaa gttaccgaaa 4321 agttgaaccg tgaaaatgaa gttaaacaat aaaaacaaat gccaaggaaa cacatttcag 4381 ttagaggaaa tttaaataag aaaaattatt gttgttgatc aaatcaaatc aatttaaagg 4441 aaactaaaaa taaaacgaaa actaaaactg aaactgaaat cgactcgaaa cgaattgaat 4501 taaatccgta gtaaaacagc aacaagaagc aaaacatcat gtgatatcta tttcaaaaat 4561 aaatcaattg acaaactaaa gagaaaccct aaccataaca aaaaccgaat atagtaaaat 4621 tagcctaaag ccacgaagcg ttcagaaagc agagtttcga agacgaaaac gaaaacgaag 4681 attaagatga agatgaagat gaagattttt ataattttcc gttgaagagt tacgtaagat 4741 cccgaaccac agatccatat tgattactaa aacacacaca tcagcaaaac atggctcgac 4801 tttgactctc tctctatctc tttctcgccc cgcactctct ctatctcttt ctgtctgtag 4861 tgttagtcga aatttggatt gtacgcgcat tcccaaaatg ttcaactcct tgctaacgta 4921 ttccagaagg ttttttataa gcatatacat aaacgtatac atacttctta tacactaatc 4981 taggctaacg ttgaataaat tctgaatgat tcgaacagca