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LOCUS XM_070219329 2672 bp mRNA linear INV 09-DEC-2024 methyltransferase FTSJ3 (LOC108056093), mRNA. ACCESSION XM_070219329 VERSION XM_070219329.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2672 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2672 /gene="LOC108056093" /note="pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056093" CDS 115..2604 /gene="LOC108056093" /codon_start=1 /product="pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3" /protein_id="XP_070075430.1" /db_xref="GeneID:108056093" /translation="MGKKTKVGKTRKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQ SQVCLDLCAAPGGWMQVAKQNMPVSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSL TRELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNSLKLATQFLRSGGWFVTKVFR SKDYNALLWVLKQLFKKVHATKPSASRKESAEIFVVCQGYLAPDHIDPRLLDSKYVFE ELDLDSNKKTSSLLHPEKQKRIKAEGYTAQDIALRNELAASEFMKAENALAALQGIGS IGIDDQRIAKHKKTTVEILECCKDLKVLGRKDIKGLVQWWKDVRGLFVKTEEAPPLIV GDPNEEKAKKPLTQAEIEDMEDAELQTQIDSIVDEEKKDLKRKRKKTLKTKAKLHEKM NLNMVIKGDDGPVEETEHEIFELKNINTSAELDDLLDVQPDFAVDDSQPEQEKLPKYK YFDKDEGNINDDLNYDDDDDESEAASEEDEDQIDGKQTGLGLSDDEDDGNSKGKNKRK KRSENPLIKSNDFRDKNTKREQRVQLWYEKDVLQNIQSDDDEETYDLDNLAKEYKAKG VSVLGETSSLAADADSELIQGKKAKRRARHEAAKEESSSESSDSEDEEANKDGEEDGE STTDAKVKKVRLTENEMALGAFLTRNKKTRRDLIDAAWNRYAFNDENLPVWFVQDEDE HMTKPAPVPKELTAEYQRKLQEVNVRPIKKVMEAKARKHRRATKRLAKAKKMAEKIME NSDATNHEKSKQLKKVYKKAQEKKKEVTYVVAKKQSAARRARRPQGVKGRYKVVDPRE KKDKRSMDVKRKREKGKGGKGGKGGGRKGRK" misc_feature 115..714 /gene="LOC108056093" /note="23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and biogenesis]; Region: RlmE; COG0293" /db_xref="CDD:440062" misc_feature 814..1224 /gene="LOC108056093" /note="Domain of unknown function (DUF3381); Region: DUF3381; pfam11861" /db_xref="CDD:463375" misc_feature 1966..2532 /gene="LOC108056093" /note="Spb1 C-terminal domain; Region: Spb1_C; pfam07780" /db_xref="CDD:462264" polyA_site 2672 /gene="LOC108056093" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttaagtttc gattgacaac acgtgcacgt gtgcacgaat ttttaaactc tccgcgagtt 61 ttctacttta tttacgattc gaccggagga acaaggctaa aagcaacaca cacgatgggc 121 aagaagacga aggttggaaa gacgcggaag gacaagttct accagctggc caaggagacg 181 ggcctgcgat cgcgtgccgc cttcaagttg atacagctga atcgcaaatt cggcttcctg 241 cagcagtcgc aggtgtgttt ggatctgtgc gccgccccag gaggatggat gcaggtggcc 301 aagcagaata tgcccgtttc gagcatcgtc ataggcgtgg atctgtttcc cattcgcccc 361 attgccggat gcattggcct ggtggaggac atcacgacag agaagtgccg ccaatcgctc 421 acacgggagc tgcaatcctg gaaagcggat gtcgtcctgc acgatggtgc tccgaatgtg 481 ggtcgcaatt ggttgtacga tgcgtatcag caaatctgcc tgaccctcaa ctccctgaag 541 ctggccaccc aattcctgcg cagcggcggt tggtttgtga ccaaggtgtt ccgctccaag 601 gactacaatg ctctgctctg ggtgctcaag cagctattca agaaggtgca tgccaccaag 661 ccgagtgcct cgcgtaagga gtccgccgag atcttcgttg tctgtcaggg ttacctggcc 721 cccgatcaca ttgatccccg cctcctggac tcgaaatatg tgttcgagga gctggatctt 781 gattctaata agaaaaccag cagcttgctg catcccgaga agcagaaacg catcaaggcc 841 gagggctata ccgctcagga tattgccctc cgcaacgaac tggccgccag tgagtttatg 901 aaggccgaaa atgctttggc cgccctgcag ggcatcggtt ccattggcat cgacgatcag 961 cgcattgcca agcacaagaa gaccaccgtg gagatcctgg aatgctgcaa ggatctcaag 1021 gtcttgggac gcaaggatat caagggtctg gtccaatggt ggaaggatgt cagggggctg 1081 tttgtgaaga ccgaggaggc gccgccactc atcgttgggg atcccaacga ggagaaggcc 1141 aagaagccct tgacccaagc ggaaatcgag gatatggaag atgcggagct gcaaactcaa 1201 attgattcca ttgtggacga ggagaaaaag gacctgaagc gcaagcgcaa gaagacgctg 1261 aaaacaaagg ccaagctgca cgagaagatg aacctgaata tggtgatcaa gggcgacgat 1321 ggtcccgtcg aggagaccga gcacgaaatc tttgagctca agaatatcaa cacctcggcg 1381 gagctcgacg atttacttga tgttcagccc gatttcgctg tggacgacag ccagccggag 1441 caggagaagc tgccgaaata caagtatttc gacaaggatg agggaaatat caatgatgat 1501 ctaaactacg acgatgatga tgatgaaagc gaagccgcct cagaggagga cgaagatcaa 1561 atagatggca aacaaacggg cctgggcctc agtgacgatg aggatgacgg caactcaaag 1621 ggtaaaaaca agagaaaaaa gcgctccgag aatccgctta tcaagtcgaa tgattttcgc 1681 gataagaaca caaagcgtga gcaacgcgta cagctttggt atgagaagga tgtcctgcag 1741 aatatccaat cggacgacga tgaggagacc tacgatctgg ataatctggc caaggagtac 1801 aaggccaagg gtgtctcggt tttgggcgag accagcagcc tcgccgcgga cgcagatagt 1861 gagctcatcc agggcaagaa ggccaaacgt cgggcacgcc atgaagcggc caaggaggag 1921 agcagctcag agtcctccga ttccgaggat gaagaagcta acaaggatgg cgaagaagat 1981 ggtgaatcga caacagatgc caaggtaaag aaggttcgtt taaccgaaaa tgaaatggcc 2041 ctgggtgcat tcctaacgcg caacaagaag acgcgtcgcg acctcatcga tgccgcctgg 2101 aatcgctatg ccttcaacga tgagaacctg cccgtttggt tcgtgcagga cgaggatgag 2161 cacatgacca agccggcgcc agtgcccaag gagctgaccg ccgagtatca acgcaaattg 2221 caggaggtca acgtgcgccc gatcaagaag gttatggagg ccaaggcacg caagcatcgt 2281 cgggccacaa aacgcttggc caaggccaag aaaatggccg agaagattat ggagaactcc 2341 gatgccacca atcacgagaa gtccaaacag ctgaagaagg tgtacaagaa ggcgcaggag 2401 aagaagaagg aagtcacata tgtggtggcc aaaaagcaat cggccgcccg tcgagcccgc 2461 cgcccacaag gtgtcaaggg tcgctacaag gtcgtggatc cgcgcgaaaa gaaggataag 2521 cgctcgatgg acgtgaagag gaaacgcgaa aagggaaagg gcggaaaggg tggcaaaggc 2581 ggtggtcgca agggccgtaa ataaaatgta aatctaacca agaattaaat atgtataatt 2641 tttagagata ttaaaaatac gtgtaaaaat ta