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LOCUS XM_070219328 3639 bp mRNA linear INV 09-DEC-2024 (vap), transcript variant X1, mRNA. ACCESSION XM_070219328 VERSION XM_070219328.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3639 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3639 /gene="vap" /note="RAS p21 protein activator vap; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108056092" CDS 314..3178 /gene="vap" /codon_start=1 /product="ras GTPase-activating protein 1" /protein_id="XP_070075429.1" /db_xref="GeneID:108056092" /translation="MADLIHLGNIDVVIQKDKPGSPTGCSDDGNLAGLGGMSGLGGMM AAGGIDLGDLAQELDHDEFDGPHMLNGERPAIIAPPESEWYHGRLDRYSAESRLRGSS KLGSYLVRESDRKPGSYVLSYYGRTGINHFRITAVCGDFYIGGRQFISLSDLVGYYTS CSDLLKRERLAIPVAPPEPVNDKKRVVAILPYTKMPETDELSFQKGDIFFVHNDMGDG WLWVTAHRTGEQGMIFRELVDDLDVSIDPNTVFPWFHPNCTKNEAVDMLVKAGPGSFL VRPSDNSPGDYSLFFHINNQIQRFRIEKKGVRYLMGGRTFECLDAVINRYRKEQIVEG HSLNHPVVNGIQPEFNQQYVVEKAAEKIYATLRECRDQIGLKKIKGIKHHGHLNKKSD KTTKWKQLYFALINDGSETQLCFYDNPKKTKPKGLIDLSCAYLYQCHDSLWERPYCFQ IVERALPCLATVTYLCAPSQESYVEWINSLKAQCDSQLSRAQKKVSRLRELRCLNLHV LEAHRLPFKLVPHPYCSISLNQVKVGKTRVKIAPEPVWEEEFVLDDVPPDVVSLTITL ISRGKRGKDSEVAELTIDLSSLKNGQETEGWYQLTGMTPMGEWGSLRLRMRYLDDLIM PCEEYSPLQQLLLESELYAVKALAELCHNDRVPLATALLRVFRQEKRETELIRMLCQA EVTRENETTTLFRGASLATTLMDLYMRTECSGFLQSAVSETVQRILESKQSAELNPTK MDVNDDACTNAEFLLQILDLVTQSIFTSPDACPRNVRFICSCLQKAVMAKWPTERLVR TRVVSGFIFLRLLCPALLNPRQFGLVSETPPMAATRSLVMVAKCLQNLANLIEFGGKE QYMEVVNPFILKNKERMIVFLDQLSSVNDPNQPLGMFVEQSTNLNSQDTGRELATLHH ICVSHSQELHELSNILSIKKLVTVTDMLTKHKLKYREMIS" misc_feature 503..811 /gene="vap" /note="N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Nterm_RasGAP; cd10353" /db_xref="CDD:198216" misc_feature order(584..586,641..643,704..706,710..712) /gene="vap" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature order(707..709,785..787) /gene="vap" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198216" misc_feature 860..1036 /gene="vap" /note="Src Homology 3 domain of Ras GTPase-Activating Protein 1; Region: SH3_RasGAP; cd11788" /db_xref="CDD:212722" misc_feature 1067..1291 /gene="vap" /note="C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); Region: SH2_Cterm_RasGAP; cd10354" /db_xref="CDD:198217" misc_feature order(1091..1093,1145..1147,1208..1210,1214..1216) /gene="vap" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature order(1211..1213,1289..1291) /gene="vap" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198217" misc_feature 1448..1765 /gene="vap" /note="RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; Region: PH_RASA1; cd13260" /db_xref="CDD:270080" misc_feature 1808..2179 /gene="vap" /note="C2 domain present in RAS p21 protein activator 1 (RasA1); Region: C2_Ras_p21A1; cd08400" /db_xref="CDD:176045" misc_feature 2171..3175 /gene="vap" /note="Ras GTPase Activating Domain; Region: RasGAP; cl02569" /db_xref="CDD:470620" misc_feature order(2276..2278,2384..2386,2390..2392,2396..2401, 2405..2407,2414..2416,2426..2428,2711..2713,2735..2740, 2747..2752,2759..2761,2822..2824,2831..2836,2843..2845, 2855..2857,2861..2863,2876..2881) /gene="vap" /note="RAS interface [polypeptide binding]; other site" /db_xref="CDD:213340" polyA_site 3639 /gene="vap" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctctgttata tcttagatag tgaatacgtc ataagcttaa ttgttactcg aaaaattcta 61 aaacctcttt aaaattataa taaagaacac acgttttcag tacaaaacta aaattgtgta 121 aaaattgtgg gatacaaaag tcttagcaca taatcatcac ggaaaactga gtacaatcac 181 caaagcttcc gtttttccta agtaaacgca aagacatcgt tgctatatgt ggcttttatc 241 aaagggaatt tcgctgaaag ttaaatatag attaagattc ccattcactg agcagagatc 301 ataaaggaag atcatggcgg acctaattca cttgggaaac atagatgttg tcatccagaa 361 agataagccc ggctcgccga cgggctgctc ggatgatgga aacctggcag gtctgggcgg 421 catgagtgga ttgggcggga tgatggccgc cggtggcatt gatctgggtg acttggcgca 481 ggaattggat cacgatgaat tcgatggacc acacatgcta aatggtgaac gtccagcgat 541 tattgctcct cccgaaagtg aatggtacca cggacgactt gatcgttact cagctgaatc 601 acgtctgcgg ggcagcagta aactgggaag ctacttagtt cgtgaaagtg accgcaagcc 661 tggctcctat gttctaagtt attatgggcg taccggcata aaccattttc ggatcacggc 721 tgtgtgcgga gacttctata tcggtggacg acaattcata tcgttgagcg atctggttgg 781 ctactatacc tcatgcagtg acctactgaa gcgcgaacga ttggccatac cagtggctcc 841 gccggagcca gttaatgata agaagcgagt cgttgccatc ctgccttata caaaaatgcc 901 agagaccgat gagctgagct tccagaaagg tgatattttc ttcgtgcaca atgacatggg 961 cgacggttgg ctgtgggtca ctgcccatcg tactggcgag cagggaatga ttttccgaga 1021 gcttgtggat gatctggatg tatccatcga tccgaatacc gtctttccgt ggtttcatcc 1081 gaattgcacc aaaaacgaag ctgtcgatat gttggttaaa gctggacccg gcagcttctt 1141 ggttcgcccc agcgacaact caccgggcga ttactccctc tttttccata ttaacaacca 1201 gatccaacga tttcgcatcg agaagaaggg cgtgcgatat ttgatgggtg ggcggacatt 1261 tgaatgcctc gatgcggtga ttaatcgtta ccgcaaggag caaattgtcg agggccattc 1321 gctcaatcat ccggttgtca atggcataca gccagagttc aatcagcaat atgttgtgga 1381 aaaggctgcg gaaaagatat atgccacact gcgcgagtgc cgtgaccaaa tcggtctgaa 1441 gaagatcaag ggaatcaaac atcatgggca tttgaacaag aaatcggaca aaacgacgaa 1501 atggaagcaa ctatatttcg ctctaatcaa cgatggctcc gagacgcaac tttgcttcta 1561 cgacaatccg aagaagacca agccgaaggg tctgatcgat ttgtcatgtg cttacctcta 1621 tcaatgtcac gattccctct gggagcgtcc ctattgcttt caaattgtgg aaagggctct 1681 gccctgtttg gccactgtga catatctgtg tgctcctagt caggaaagct acgtggagtg 1741 gatcaattcg ctgaaggccc aatgcgactc ccagctaagt cgggcccaga agaaggtctc 1801 acggctacgc gagcttcggt gtctcaatct gcatgtgcta gaagctcatc gcttaccatt 1861 taaattagtg ccacatccat actgcagtat ttcactcaat caagtcaaag tgggtaaaac 1921 acgtgtcaaa attgcacccg aaccggtttg ggaggaggaa tttgtactgg atgacgttcc 1981 cccagatgtt gtctccctaa ccattacgtt aatatcgcgc ggtaaacgcg gcaaagattc 2041 ggaagtggcc gagctaacga tcgatttgtc tagtctgaag aatggccaag agactgaggg 2101 ctggtaccag ctcaccggaa tgacgccgat gggcgaatgg ggctcgctgc gtctgcgtat 2161 gcgttacctc gacgatctga taatgccctg cgaggagtac agtccactgc agcaattgct 2221 actcgaatcg gagctgtatg cggtgaaggc gctggcggag ctctgtcaca acgatcgagt 2281 gccattggcg acggctctgt tgcgagtctt tcggcaggag aagcgcgaga cggagctaat 2341 tcgaatgctg tgccaggcgg aggtgacacg cgaaaacgag acgacgacac ttttccgggg 2401 cgcctccttg gccaccacac taatggattt gtatatgcga accgaatgca gtggattctt 2461 gcagtcggcg gtcagcgaaa ccgttcagcg cattttggag agcaagcagt cggcggaatt 2521 aaatccaacg aaaatggacg tcaacgatga tgcctgcacg aatgccgagt ttctgctgca 2581 aatcctcgat ctggtcaccc agtcgatatt tacttcaccg gacgcctgtc cccggaatgt 2641 gcgcttcatt tgcagctgcc tgcagaaggc tgtgatggcc aagtggccga cagagcggct 2701 ggttcgcacc cgagtcgtct ccgggttcat attcttgcgc ctcctatgcc cagccctgct 2761 gaatcctcga caatttggcc tggtcagcga gacgcctccg atggcggcca ctcgttcttt 2821 ggtcatggtc gccaagtgtc ttcaaaattt ggccaacttg attgagtttg gcggcaagga 2881 acaatacatg gaggttgtca atccgtttat tttgaaaaac aaggaacgca tgattgtctt 2941 cttggatcaa ctgtcctccg tcaacgatcc gaatcaaccg cttggaatgt ttgtcgaaca 3001 aagtacaaat ctgaattcac aagacactgg gcgcgagctg gctaccttac atcacatctg 3061 tgtatcgcat tcgcaagagc ttcacgagct atccaacata ctttcaatta agaagctggt 3121 cacagtaacg gacatgttga ccaagcataa actgaagtac cgcgagatga tcagctaaaa 3181 taaagataat aaacgcgatg tcttcttatc tacacaagtc ccttcatacc tttttataac 3241 aaatatttat atgtgtatac tattagaata catgataaca ataagaactc ataataactg 3301 gttgaattgt attggaatag taaacagaag aatatcattt ataaaaatta tttatacgaa 3361 atgaaatatt atatttaact gacaggtata tgcatttatt tattattaaa aattacttat 3421 ataatacact agcttacacg gagtactctc cgtatagccg caaaaaactc agaaattata 3481 catggttttg cttttgatat tgtgttttaa atttacagaa acagaaacca cttttatcca 3541 aaatccatac atttttttcg agacaaataa cgcataaaat cgaaataaat taatgaattt 3601 ataaaaaaaa gagtgcaaaa gacttcctct gaaaaaata