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LOCUS XM_070219309 4484 bp mRNA linear INV 09-DEC-2024 X4, mRNA. ACCESSION XM_070219309 VERSION XM_070219309.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4484 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4484 /gene="X11L" /note="X11L; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056729" CDS 217..3627 /gene="X11L" /codon_start=1 /product="uncharacterized protein X11L isoform X3" /protein_id="XP_070075410.1" /db_xref="GeneID:108056729" /translation="MNLSNSCSDSSNESMVNPMQQQQQQERYVWEMRTRSPNVTPAST VLNSPDLNAELSYVPLQGLSPTSGGGGNGGGGTGGQGAARDSSNYYYQRPHLHQIRLG RSPGSQFETRDVLPQGLASPGSPTDVGKADGQCLRDGEIVVFDDIDTNWMNKPSSGGH RTPGSNEDVLKVTKMIGQLPIAEYEGSPRRFGSQTNAGGAPPPRKRPPGFPQRVSPTT SGVNNATASAKASVGNLIDLIDHEEEKTPTFDYLYEFSETRKVLEEFFKANPEDYAAE SGDDIASSQQQEYPATPMEQAYIGQRLARIPKDELYMVHRSPIKKPPNDQNPATAYQE HNDIELYIDSNSRSSGDLADTELEANLRRHSRNFTLSPETTDYDSNCGDLDSLSNDIN CPTDYGKLYTSMPVLEDGLSSGHASDTENNVSVVCDQKQSSQSQFQPVHEHNGNGERL ENGDYNVMSASMATLTTDASQSALISDFASLPMPPAPAPVPPPSSSSPPQIEIADASE SMAMAAEADNPLDSHYGAVYAAALTEKSTALPSQAASEIQEAMKEIRSALQRAKTQPE KLKFCDEVLPTDPDSPVWVPRKTTAVSVAQAAATAADEEPDTDLETDRLLGQQRHDEQ DFFADQQLADSNANEGTEIASNGHLNGMAVDNNNPNPNPMGNAKPQTYSTATIRQGIG TSLTPNSPDICQIVGTADISISSPEKLQFSKSPTGSIKSLKDSANSDKKAKSRNKEVL IEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKAPEGESQPSTEVDLFISTE KIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPNSVVDPATASPLGDPLP SAAAAGMGESDESPPKEQALSKHNRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFL KANGIENESLAKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVE SGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGMSLVGLPLSTCQSYIRNAKN QTAVKFTVVPCPPVVEVKILRPKALFQLGFSVQNGVICSLLRGGIAERGGVRVGHRII EINNQSVVAVPHDTIVKLLSSSVGEILMKTMPTSMFRLLTGQETPIYI" misc_feature 2428..2976 /gene="X11L" /note="X11-like Phosphotyrosine-binding (PTB) domain; Region: PTB_X11; cd01208" /db_xref="CDD:269919" misc_feature order(2461..2463,2695..2697,2887..2889) /gene="X11L" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:269919" misc_feature order(2515..2517,2662..2664,2671..2688,2911..2913, 2944..2946,2953..2955) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:269919" misc_feature 3076..3327 /gene="X11L" /note="PDZ domain 1 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ1_APBA1_3-like; cd06720" /db_xref="CDD:467203" misc_feature order(3109..3129,3169..3171,3178..3180,3268..3270, 3280..3282,3289..3294) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467203" misc_feature 3358..3576 /gene="X11L" /note="PDZ domain 2 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ2_APBA1_3-like; cd06793" /db_xref="CDD:467255" misc_feature order(3385..3405,3418..3420,3427..3429,3514..3516, 3526..3528,3535..3540) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467255" polyA_site 4484 /gene="X11L" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgatatcga agaagaagag actccgatag gcttggatat cgataatcgc tgcgaaggag 61 tgcaataaat atgaattaaa tggcagtggc ccccagtgag gcagcaatcg cagcagcagc 121 agcagcgcat gcagcagcag cagcaacagc agcaccagca gaacagtagt agtcatcatc 181 cccggagatc cccagttgtc cacttgaact ccagccatga acttgtccaa ttcctgcagc 241 gacagcagca acgagtccat ggtcaatccg atgcaacagc agcagcagca ggagcgatat 301 gtgtgggaga tgcgcacccg tagtccaaat gtaacgccag ccagcacggt gctaaattcg 361 ccggatctca atgccgagct gtcctacgtt ccgctgcagg gtttgtcacc aacgagcgga 421 gggggaggaa acggaggagg aggtactggt ggtcagggtg cggcccgaga ttccagcaac 481 tattactatc agcgaccgca cttgcatcag attcggctgg gcagaagtcc gggcagccaa 541 ttcgagacgc gggatgttct gccacagggt ctggccagtc ccggctcgcc gacggatgtg 601 ggcaaagcgg atggccagtg tctgcgggat ggtgagatcg tggtcttcga cgacatcgac 661 accaactgga tgaacaagcc atcgagtggt ggccaccgaa cgccgggcag caacgaggat 721 gttctgaaag tgaccaagat gattggccag ctgcccattg ccgagtacga gggatcaccg 781 cgacgatttg gtagtcaaac gaatgcagga ggagcaccgc caccgcgaaa acgtccgccg 841 ggcttcccgc aaagggtttc gcccacaacc agtggcgtga ataatgcgac tgcctcggcc 901 aaagcatcgg tgggcaacct aatcgatctg atcgaccacg aggaggagaa gacgcccact 961 ttcgattacc tgtacgagtt ctcagagacg cgaaaggtgc tggaggagtt cttcaaggcg 1021 aatccggagg actacgccgc ggaaagtggc gacgatatag ccagttcgca gcaacaggag 1081 tacccagcca cgcccatgga gcaggcatat attggtcagc ggctggcgcg aatacccaaa 1141 gatgagctct acatggtgca ccgttcgccc atcaagaagc caccaaatga ccaaaatcca 1201 gcgacggcct accaggagca caatgacatc gagctgtata tcgattcgaa tagtcgcagc 1261 agcggcgatc tggcggacac cgagctggag gcaaatttgc gtaggcattc gcgcaacttt 1321 accctttcgc cggagacaac ggactacgat tcgaattgcg gcgatctgga tagtctgtcc 1381 aatgacatca actgtcccac ggattatggc aaactgtata cgagcatgcc cgtcctggag 1441 gatggcctga gcagtggtca tgcctccgac accgagaaca atgtctccgt ggtctgtgac 1501 caaaagcagt cgtctcagtc gcaattccag ccggtccacg agcacaacgg aaacggcgag 1561 cggctggaga acggagacta caatgtgatg agcgccagca tggccacgtt gaccacagat 1621 gcctcgcaat cggcgctgat aagcgacttt gcctcgctgc ctatgccacc ggcaccagct 1681 ccagttccgc ccccttcatc atcatcgccg ccccaaattg agatcgccga tgccagtgaa 1741 tccatggcca tggccgcaga ggctgataat ccgctggaca gtcactatgg tgccgtttat 1801 gcagccgctc taacagaaaa gtcaactgct ctgccatcac aggctgcctc ggaaattcag 1861 gaggccatga aggagattcg gtccgccttg cagcgggcca aaacgcagcc ggaaaagctc 1921 aagttctgcg acgaggtgct gcccacagat ccggattccc ccgtttgggt gccgcgcaag 1981 acgacggcgg tctcggtggc tcaggctgcg gcaacggcgg cggacgagga gccagacacg 2041 gacctggaaa cggatcgact actgggtcag cagcggcacg acgagcagga tttcttcgct 2101 gatcagcaac tggcggatag caatgctaac gagggaacag agatagccag caatggacat 2161 ctgaatggca tggccgtcga taacaacaat ccgaatccga atccaatggg caatgccaag 2221 ccgcagactt actcgacggc caccattcgt cagggcatcg gcacctcgct gacgcccaat 2281 tcgccggaca tctgccagat tgttggcacg gcggacatct cgattagttc gccggagaag 2341 ctgcagttta gcaagagtcc cacgggctcc atcaagtcgc tgaaggattc ggccaactcg 2401 gacaagaagg ccaagtcgcg caacaaggag gttcttatcg agggcgtgct ctttcgggcc 2461 cggtatctcg gttcgactca gcttgtttgc gagggccagc cgaccaagtc gaccaggatg 2521 atgcaggccg aggaggccgt ctccaggatc aaggctcccg agggcgaaag ccagccgagc 2581 accgaagtgg acctgttcat atcaaccgag aaaataatgg tgctgaacac cgatctcaag 2641 gagatcatga tggaccatgc cctacgcact atatcctata tagcggacat tggcgatctg 2701 gttgtgctga tggctcgtcg ccgattcgtt ccgaatagtg tggtggatcc agcgacggcc 2761 agtcccctgg gcgatcccct tcccagtgca gcggcggcgg gaatgggtga atcggatgag 2821 tcgccgccca aggaacaggc cctaagcaaa cataatcgca cgcccaagat gatatgtcac 2881 gttttcgaga gcgacgaggc acagttcata gcccagtcca ttggacaggc ctttcaggtg 2941 gcctacatgg agttcctcaa ggcgaacggc atcgagaacg agagtctggc caaggagatg 3001 gactaccagg aggtgctcaa cagtcaggag atcttcggcg acgagctgga gatcttcgcc 3061 aagaaggagc tgcaaaagga ggtggtggtg cccaaggcca agggcgaaat cctgggcgtt 3121 gtgatcgtcg agagcggctg gggctccatg ctgcccaccg tggtgattgc caatctgatg 3181 agttccggtg cggctgcccg ctgcggtcag ctgaacatcg gtgaccagct gatagccatc 3241 aatggcatga gcctcgtcgg attgccgctg tccacctgcc agagctacat acgcaatgcc 3301 aagaatcaaa ctgccgtcaa gttcaccgtc gtgccctgtc ctccggtcgt cgaggtcaag 3361 atcctgcgac ccaaggcgct ctttcagttg ggttttagtg ttcaaaatgg cgtgatctgt 3421 agccttttgc gtggcggcat tgccgagcgg ggcggagtac gcgttggcca tcgcatcatt 3481 gagattaaca accagagcgt agtggccgtt ccgcacgata ccattgtcaa gctgttgtca 3541 tcctcagtgg gcgagatcct catgaagaca atgcccacgt ccatgtttcg tttgctcacc 3601 ggccaggaga cgcctatcta tatataaacc tatataaata tgcaactgtt cacacgcctg 3661 cgctggaatc gaaaaactat aaattcgtca actgcaactc gatcagcttt aagttccatc 3721 aactgaaaac gaatcgatag ctaatcgatt cgaatataga ccaattattg gaattcgatc 3781 agccttaagt tgataaattg tacactttac attttccaaa aatgtttctt aaatgattcg 3841 acaatttgta aatcgattga gccttaaatg agattagttc tttatcgaca aatcgttcaa 3901 ctgcccagaa ttgatatact gctatggaga ttattaacag agcttcaaaa gaatattcat 3961 gtttttcgct attcggccca tctttgtata tgaaaaagac tgaatttaaa gccagtgcga 4021 gtgtatgtga gcagtcattg taaagtattc aaaaaaattg taagcccaaa tgtcccaaaa 4081 atatatatac cccttatatg tatacctttc ccattattcc ctcgcatcca caaccagtag 4141 gctataagca ttcgattgaa tttacttgca agcaattatt tatgatatga tctaatccat 4201 tatttgtcat gtaaattaac cgtactttag ttctttaact acatttataa ttttcgataa 4261 agagaaacaa aaagcaagac acttacctta tgccaaaaaa gagttagatt tcgttacatt 4321 tattattgta tagattgtat tatccattgc ggataagctg gattattgca ataccattac 4381 cgatatttat aattaaagat gaatagcctt agaaaaacga agccatgcct gcaaaacaac 4441 aaacaaaata aatgcattta aaacgcgtca gattaaagca aaaa