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LOCUS XM_070219308 4499 bp mRNA linear INV 09-DEC-2024 X3, mRNA. ACCESSION XM_070219308 VERSION XM_070219308.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4499 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4499 /gene="X11L" /note="X11L; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056729" CDS 217..3642 /gene="X11L" /codon_start=1 /product="uncharacterized protein X11L isoform X2" /protein_id="XP_070075409.1" /db_xref="GeneID:108056729" /translation="MNLSNSCSDSSNESMVNPMQQQQQQERYVWEMRTRSPNVTPAST VLNSPDLNAELSYVPLQGLSPTSGGGGNGGGGTGGQGAARDSSNYYYQRPHLHQIRLG RSPGSQFETRDVLPQGLASPGSPTDVGKADGQCLRDGEIVVFDDIDTNWMNKPSSGGH RTPGSNEDVLKVTKMIGQLPIAEYEGSPRRFGSQTNAGGAPPPRKRPPGFPQRVSPTT SGVNNATASAKASVGNLIDLIDHEEEKTPTFDYLYEFSETRKVLEEFFKANPEDYAAE SGDDIASSQQEYPATPMEQAYIGQRLARIPKDELYMVHRSPIKKPPNDQNPATAYQEH NDIELYIDSNSRSSGDLADTELEANLRRHSRNFTLSPETTDYDSNCGDLDSLSNDINC PTDYGKLYTSMPVLEDGLSSGHASDTENNVSVVCDQKQSSQSQFQPVHEHNGNGERLE NGDYNVMSASMATLTTDASQSALISDFASLPMPPAPAPVPPPSSSSPPQIEIADASES MAMAAEADNPLDSHYGAVYAAALTEKSTALPSQAASEIQEAMKEIRSALQRAKTQPEK LKFCDEVLPTDPDSPVWVPRKTTAVSVAQAAATAADEEPDTDLETDRLLGQQRHDEQD FFADQQLADSNANEGTEIASNGHLNGMAVDNNNPNPNPMGNAKPQTYSTATIRQGIGT SLTPNSPDICQIVGTADISISSPEKLQFSKSPTGSIKSLKDSANSDKKAKSRNKEGLL EPKVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKAPEGESQPSTEVDL FISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPNSVVDPATASPL GDPLPSAAAAGMGESDESPPKEQALSKHNRTPKMICHVFESDEAQFIAQSIGQAFQVA YMEFLKANGIENESLAKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPKAKGEILG VVIVESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGMSLVGLPLSTCQSYI RNAKNQTAVKFTVVPCPPVVEVKILRPKALFQLGFSVQNGVICSLLRGGIAERGGVRV GHRIIEINNQSVVAVPHDTIVKLLSSSVGEILMKTMPTSMFRLLTGQETPIYI" misc_feature 2440..2991 /gene="X11L" /note="X11-like Phosphotyrosine-binding (PTB) domain; Region: PTB_X11; cd01208" /db_xref="CDD:269919" misc_feature order(2476..2478,2710..2712,2902..2904) /gene="X11L" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:269919" misc_feature order(2530..2532,2677..2679,2686..2703,2926..2928, 2959..2961,2968..2970) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:269919" misc_feature 3091..3342 /gene="X11L" /note="PDZ domain 1 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ1_APBA1_3-like; cd06720" /db_xref="CDD:467203" misc_feature order(3124..3144,3184..3186,3193..3195,3283..3285, 3295..3297,3304..3309) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467203" misc_feature 3373..3591 /gene="X11L" /note="PDZ domain 2 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ2_APBA1_3-like; cd06793" /db_xref="CDD:467255" misc_feature order(3400..3420,3433..3435,3442..3444,3529..3531, 3541..3543,3550..3555) /gene="X11L" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467255" polyA_site 4499 /gene="X11L" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgatatcga agaagaagag actccgatag gcttggatat cgataatcgc tgcgaaggag 61 tgcaataaat atgaattaaa tggcagtggc ccccagtgag gcagcaatcg cagcagcagc 121 agcagcgcat gcagcagcag cagcaacagc agcaccagca gaacagtagt agtcatcatc 181 cccggagatc cccagttgtc cacttgaact ccagccatga acttgtccaa ttcctgcagc 241 gacagcagca acgagtccat ggtcaatccg atgcaacagc agcagcagca ggagcgatat 301 gtgtgggaga tgcgcacccg tagtccaaat gtaacgccag ccagcacggt gctaaattcg 361 ccggatctca atgccgagct gtcctacgtt ccgctgcagg gtttgtcacc aacgagcgga 421 gggggaggaa acggaggagg aggtactggt ggtcagggtg cggcccgaga ttccagcaac 481 tattactatc agcgaccgca cttgcatcag attcggctgg gcagaagtcc gggcagccaa 541 ttcgagacgc gggatgttct gccacagggt ctggccagtc ccggctcgcc gacggatgtg 601 ggcaaagcgg atggccagtg tctgcgggat ggtgagatcg tggtcttcga cgacatcgac 661 accaactgga tgaacaagcc atcgagtggt ggccaccgaa cgccgggcag caacgaggat 721 gttctgaaag tgaccaagat gattggccag ctgcccattg ccgagtacga gggatcaccg 781 cgacgatttg gtagtcaaac gaatgcagga ggagcaccgc caccgcgaaa acgtccgccg 841 ggcttcccgc aaagggtttc gcccacaacc agtggcgtga ataatgcgac tgcctcggcc 901 aaagcatcgg tgggcaacct aatcgatctg atcgaccacg aggaggagaa gacgcccact 961 ttcgattacc tgtacgagtt ctcagagacg cgaaaggtgc tggaggagtt cttcaaggcg 1021 aatccggagg actacgccgc ggaaagtggc gacgatatag ccagttcgca acaggagtac 1081 ccagccacgc ccatggagca ggcatatatt ggtcagcggc tggcgcgaat acccaaagat 1141 gagctctaca tggtgcaccg ttcgcccatc aagaagccac caaatgacca aaatccagcg 1201 acggcctacc aggagcacaa tgacatcgag ctgtatatcg attcgaatag tcgcagcagc 1261 ggcgatctgg cggacaccga gctggaggca aatttgcgta ggcattcgcg caactttacc 1321 ctttcgccgg agacaacgga ctacgattcg aattgcggcg atctggatag tctgtccaat 1381 gacatcaact gtcccacgga ttatggcaaa ctgtatacga gcatgcccgt cctggaggat 1441 ggcctgagca gtggtcatgc ctccgacacc gagaacaatg tctccgtggt ctgtgaccaa 1501 aagcagtcgt ctcagtcgca attccagccg gtccacgagc acaacggaaa cggcgagcgg 1561 ctggagaacg gagactacaa tgtgatgagc gccagcatgg ccacgttgac cacagatgcc 1621 tcgcaatcgg cgctgataag cgactttgcc tcgctgccta tgccaccggc accagctcca 1681 gttccgcccc cttcatcatc atcgccgccc caaattgaga tcgccgatgc cagtgaatcc 1741 atggccatgg ccgcagaggc tgataatccg ctggacagtc actatggtgc cgtttatgca 1801 gccgctctaa cagaaaagtc aactgctctg ccatcacagg ctgcctcgga aattcaggag 1861 gccatgaagg agattcggtc cgccttgcag cgggccaaaa cgcagccgga aaagctcaag 1921 ttctgcgacg aggtgctgcc cacagatccg gattcccccg tttgggtgcc gcgcaagacg 1981 acggcggtct cggtggctca ggctgcggca acggcggcgg acgaggagcc agacacggac 2041 ctggaaacgg atcgactact gggtcagcag cggcacgacg agcaggattt cttcgctgat 2101 cagcaactgg cggatagcaa tgctaacgag ggaacagaga tagccagcaa tggacatctg 2161 aatggcatgg ccgtcgataa caacaatccg aatccgaatc caatgggcaa tgccaagccg 2221 cagacttact cgacggccac cattcgtcag ggcatcggca cctcgctgac gcccaattcg 2281 ccggacatct gccagattgt tggcacggcg gacatctcga ttagttcgcc ggagaagctg 2341 cagtttagca agagtcccac gggctccatc aagtcgctga aggattcggc caactcggac 2401 aagaaggcca agtcgcgcaa caaggagggt cttttggaac ccaaagttct tatcgagggc 2461 gtgctctttc gggcccggta tctcggttcg actcagcttg tttgcgaggg ccagccgacc 2521 aagtcgacca ggatgatgca ggccgaggag gccgtctcca ggatcaaggc tcccgagggc 2581 gaaagccagc cgagcaccga agtggacctg ttcatatcaa ccgagaaaat aatggtgctg 2641 aacaccgatc tcaaggagat catgatggac catgccctac gcactatatc ctatatagcg 2701 gacattggcg atctggttgt gctgatggct cgtcgccgat tcgttccgaa tagtgtggtg 2761 gatccagcga cggccagtcc cctgggcgat ccccttccca gtgcagcggc ggcgggaatg 2821 ggtgaatcgg atgagtcgcc gcccaaggaa caggccctaa gcaaacataa tcgcacgccc 2881 aagatgatat gtcacgtttt cgagagcgac gaggcacagt tcatagccca gtccattgga 2941 caggcctttc aggtggccta catggagttc ctcaaggcga acggcatcga gaacgagagt 3001 ctggccaagg agatggacta ccaggaggtg ctcaacagtc aggagatctt cggcgacgag 3061 ctggagatct tcgccaagaa ggagctgcaa aaggaggtgg tggtgcccaa ggccaagggc 3121 gaaatcctgg gcgttgtgat cgtcgagagc ggctggggct ccatgctgcc caccgtggtg 3181 attgccaatc tgatgagttc cggtgcggct gcccgctgcg gtcagctgaa catcggtgac 3241 cagctgatag ccatcaatgg catgagcctc gtcggattgc cgctgtccac ctgccagagc 3301 tacatacgca atgccaagaa tcaaactgcc gtcaagttca ccgtcgtgcc ctgtcctccg 3361 gtcgtcgagg tcaagatcct gcgacccaag gcgctctttc agttgggttt tagtgttcaa 3421 aatggcgtga tctgtagcct tttgcgtggc ggcattgccg agcggggcgg agtacgcgtt 3481 ggccatcgca tcattgagat taacaaccag agcgtagtgg ccgttccgca cgataccatt 3541 gtcaagctgt tgtcatcctc agtgggcgag atcctcatga agacaatgcc cacgtccatg 3601 tttcgtttgc tcaccggcca ggagacgcct atctatatat aaacctatat aaatatgcaa 3661 ctgttcacac gcctgcgctg gaatcgaaaa actataaatt cgtcaactgc aactcgatca 3721 gctttaagtt ccatcaactg aaaacgaatc gatagctaat cgattcgaat atagaccaat 3781 tattggaatt cgatcagcct taagttgata aattgtacac tttacatttt ccaaaaatgt 3841 ttcttaaatg attcgacaat ttgtaaatcg attgagcctt aaatgagatt agttctttat 3901 cgacaaatcg ttcaactgcc cagaattgat atactgctat ggagattatt aacagagctt 3961 caaaagaata ttcatgtttt tcgctattcg gcccatcttt gtatatgaaa aagactgaat 4021 ttaaagccag tgcgagtgta tgtgagcagt cattgtaaag tattcaaaaa aattgtaagc 4081 ccaaatgtcc caaaaatata tatacccctt atatgtatac ctttcccatt attccctcgc 4141 atccacaacc agtaggctat aagcattcga ttgaatttac ttgcaagcaa ttatttatga 4201 tatgatctaa tccattattt gtcatgtaaa ttaaccgtac tttagttctt taactacatt 4261 tataattttc gataaagaga aacaaaaagc aagacactta ccttatgcca aaaaagagtt 4321 agatttcgtt acatttatta ttgtatagat tgtattatcc attgcggata agctggatta 4381 ttgcaatacc attaccgata tttataatta aagatgaata gccttagaaa aacgaagcca 4441 tgcctgcaaa acaacaaaca aaataaatgc atttaaaacg cgtcagatta aagcaaaaa