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LOCUS XM_070219301 2489 bp mRNA linear INV 09-DEC-2024 transcript variant X6, mRNA. ACCESSION XM_070219301 VERSION XM_070219301.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2489 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2489 /gene="Rip11" /note="Rab11 interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108069860" CDS 313..1587 /gene="Rip11" /codon_start=1 /product="rab11 family-interacting protein 1 isoform X6" /protein_id="XP_070075402.1" /db_xref="GeneID:108069860" /translation="MWSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVK DKAETSVNWNEECELKIPDQGNRAELTLTCLHRNNLGIDEFLGQASLPLNEMDVYDRP RAKWFKLESKPGKEKKNKERGELEVRIAFVVKSGSLTDLSKKDKHKSSIGQLASSVGG SLLSIGNGEKRRSIKKLAGSLSSKLHIRSKKKHQEGGADDSSSFGGSFASLGTPNSSN GRGQNGGGGSGRRRGGQRAGEADPGVISEDEDEFVFDNLSHKSSGSSLNIQRTGLQPP AALGTAPNFAPRHPSPLLSNGGGVAGGGSGKDKYNNDNESNSPSPKSTERIIIGHEKS GSHAERRSEISAQLAKKYEGKSREELMLIANGMENEALLQRQRVKELEDYLDNLLLRV METHPKILQNPYSRTTSAKSYKNYINMNDFLK" misc_feature 331..702 /gene="Rip11" /note="C2 domain found in Rab11-family interacting proteins (FIP) class I; Region: C2_Rab11-FIP_classI; cd08682" /db_xref="CDD:176064" misc_feature 1378..1521 /gene="Rip11" /note="FIP domain; Region: RBD-FIP; pfam09457" /db_xref="CDD:462805" polyA_site 2489 /gene="Rip11" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccacctttg aaacaacaac agcacgcgtc gcgtctctcc gcttttctcc ttcgtttttt 61 ttttacacca cactctcctg gcattttaca cacgattctg atactgatac cgttttcgtg 121 tcgcgcgtga ttgaattggc aaacggcagg aagaaaaccc agtgtgcgcg cagtgtcaac 181 aagaaaaaca caaagttaca aaggaaaaaa aaaccaaact ataaattcca aaagagagga 241 agcaaaaggc aggacttttg caggatcagc agagagagag agagagagtt gatcaacggg 301 atacagggtg acatgtggag tccgacgcac tgcagtgtaa cggtgcagcg agcgcggggg 361 ctgctaacca agggcaagaa tggcaccaac aactgcttcg tcacgattgc cttgggcaag 421 gagaagtacc agacgtcggt caaggacaag gccgagacga gcgtcaattg gaacgaggag 481 tgcgagctca aaatccccga tcagggcaac cgcgccgagc tcactttgac ctgcctgcac 541 cgcaacaatc tgggcatcga tgagttcctc ggccaggcct cgctgcccct caacgagatg 601 gacgtctacg atcgtccgcg cgccaaatgg ttcaagctgg agagcaagcc gggcaaggag 661 aagaagaaca aggagcgcgg cgagctggag gtgcgcatcg ccttcgtcgt gaagtccggt 721 tcgctgaccg atctcagcaa gaaggacaag cacaagtctt ccattggcca gctggccagc 781 tccgttggcg gcagcctgct gtccatcggc aatggcgaga agcggcgcag catcaagaag 841 ctggccggat cgctgagctc caagctgcac atacgcagca agaagaagca tcaggaggga 901 ggagcggatg atagcagctc ctttggcggc tcctttgcca gcctgggcac cccaaatagc 961 tcgaatggcc ggggacagaa cggcggcggc ggcagtggac gacgacgtgg cggccagcgg 1021 gcgggcgagg ccgatcccgg cgtgattagc gaggatgagg atgagtttgt cttcgataat 1081 ctgtcgcaca agagttcggg tagctcgctg aacatccaac gcaccggttt gcagcccccg 1141 gcggcgttag gaacggcgcc taactttgcg ccgcgccatc catcgcctct gctgagcaat 1201 ggaggaggag tagcaggcgg cggcagcggg aaagataaat acaacaacga caatgagagc 1261 aactcgccta gtcccaagtc cacggagcgc ataattattg gtcacgagaa gtcgggctcg 1321 catgcggagc gacgctcgga gatatccgcc cagctggcca agaaatacga gggcaagtcc 1381 cgggaggaac taatgctaat tgccaacgga atggagaacg aggctctgct gcagcgacag 1441 cgcgtcaagg agctggagga ctacctggac aacctgctgc tgcgcgtgat ggagacgcat 1501 ccgaagatct tgcagaatcc ctattcgcgc accacgtccg ccaagagtta taaaaattac 1561 atcaatatga atgactttct aaagtaagtg ctgcgcgcat gttgcaagtt gcatttaagt 1621 agacacttaa ccaacaacaa tccccaacaa caacaacaac aactacatca ccaactacac 1681 cacaaccccc aacaacaaca agaacaacta caagtgaggc aactccttcg aaaggaacaa 1741 caactatagc tggaagtcga acggctaaat agccaaaaac tggtcaccaa gcgtcaccaa 1801 ttgattcact tgacccacaa cagctggagg agatcggtgg cgcctacggg tgcgggtgca 1861 gaatcgaaac actaatccaa caccatgttg cctttgtcgt gaacagcgaa attcaagtgc 1921 tttctaaacc gtatttctaa gagtggggga ctaaactaaa ctaattgtac acgtactttg 1981 tccaatttgc ttggggagtg caaaattttg attgatattt tcgtagcatt cgtgttctct 2041 tatgtatgtt tgtttgcccc ccccccccac taaaacgaac taaattaatt gtactatata 2101 tgctacttac tactatgttg cgtttggcat tcgctgaacc atcgatttgc cttgattcga 2161 gtcccttgtc gtcgattgat tgaaattatc cgaaagtatt ttgtttattt tttttgtatg 2221 tccatttctt ttttttgttt tttgtaatat tgtgcaaaaa agagtttgag aagtttttgt 2281 aaagtgctgc gagggaaagt ggccttagtg gattaagttt taaattattt atgttttagc 2341 ggttaagcga aatgggggga aaaaaggggg atcgacccgg gtcccccgca aaaacaccac 2401 acacagttga aatatgttga tactacaatg attttactta ttgatataca cgcaaacaga 2461 ataaaaacat ttttaacatt aataacaaa