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LOCUS XM_070219298 3629 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070219298 VERSION XM_070219298.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3629 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3629 /gene="Rip11" /note="Rab11 interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108069860" CDS 313..2727 /gene="Rip11" /codon_start=1 /product="rab11 family-interacting protein 1 isoform X3" /protein_id="XP_070075399.1" /db_xref="GeneID:108069860" /translation="MWSPTHCSVTVQRARGLLTKGKNGTNNCFVTIALGKEKYQTSVK DKAETSVNWNEECELKIPDQGNRAELTLTCLHRNNLGIDEFLGQASLPLNEMDVYDRP RAKWFKLESKPGKEKKNKERGELEVRIAFVVKSGSLTDLSKKDKHKSSIGQLASSVGG SLLSIGNGEKRRSIKKLAGSLSSKLHIRSKKKHQEGGADDSSSFGGSFASLGTPNSSN GRGQNGGGGSGRRRGGQRAGEADPGVISEDEDEFVFDNLSHKSSGSSLNIQRTGLQPP AALGTAPNFAPRHPSPLLSNGGGVAGGGSGKGKPAILPVTLDEDDAPIDADMEQLELD FSVRAHARSSNSSSTLPPPSKPPRIPLEQEQPVAESLEREKPKEKPREKPKEVESDKD EWASKLYGGGKYLEIGSSDSLKRRSWEDRVPLPASVEEPPPMPTSSSSSSSSEDSDED EDEQPPQTAPPPVPVPAPAAAPAPVAATSSSLFSPEVEHRNFDTFNASFAKYEQRNST AIFADEPELDDLTAELEKPVPTPTARPKPQPRATADLRAEEEEAARQQRAEEDARLEA ELRLNEERLREEEAAMQREMEEERERERRKQLQLDEQQRREAKRWEEDQRLLSFAKRS TSLEEPVASTEKEETEPAEVEATEPEHNFLTPEQSPKEFQTNGSGGGEHWEKRLGKFK YGNKRDKYNNDNESNSPSPKSTERIIIGHEKSGSHAERRSEISAQLAKKYEGKSREEL MLIANGMENEALLQRQRVKELEDYLDNLLLRVMETHPKILQNPYSRTTSAKSYKNYIN MNDFLK" misc_feature 331..702 /gene="Rip11" /note="C2 domain found in Rab11-family interacting proteins (FIP) class I; Region: C2_Rab11-FIP_classI; cd08682" /db_xref="CDD:176064" misc_feature 2518..2661 /gene="Rip11" /note="FIP domain; Region: RBD-FIP; pfam09457" /db_xref="CDD:462805" polyA_site 3629 /gene="Rip11" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccacctttg aaacaacaac agcacgcgtc gcgtctctcc gcttttctcc ttcgtttttt 61 ttttacacca cactctcctg gcattttaca cacgattctg atactgatac cgttttcgtg 121 tcgcgcgtga ttgaattggc aaacggcagg aagaaaaccc agtgtgcgcg cagtgtcaac 181 aagaaaaaca caaagttaca aaggaaaaaa aaaccaaact ataaattcca aaagagagga 241 agcaaaaggc aggacttttg caggatcagc agagagagag agagagagtt gatcaacggg 301 atacagggtg acatgtggag tccgacgcac tgcagtgtaa cggtgcagcg agcgcggggg 361 ctgctaacca agggcaagaa tggcaccaac aactgcttcg tcacgattgc cttgggcaag 421 gagaagtacc agacgtcggt caaggacaag gccgagacga gcgtcaattg gaacgaggag 481 tgcgagctca aaatccccga tcagggcaac cgcgccgagc tcactttgac ctgcctgcac 541 cgcaacaatc tgggcatcga tgagttcctc ggccaggcct cgctgcccct caacgagatg 601 gacgtctacg atcgtccgcg cgccaaatgg ttcaagctgg agagcaagcc gggcaaggag 661 aagaagaaca aggagcgcgg cgagctggag gtgcgcatcg ccttcgtcgt gaagtccggt 721 tcgctgaccg atctcagcaa gaaggacaag cacaagtctt ccattggcca gctggccagc 781 tccgttggcg gcagcctgct gtccatcggc aatggcgaga agcggcgcag catcaagaag 841 ctggccggat cgctgagctc caagctgcac atacgcagca agaagaagca tcaggaggga 901 ggagcggatg atagcagctc ctttggcggc tcctttgcca gcctgggcac cccaaatagc 961 tcgaatggcc ggggacagaa cggcggcggc ggcagtggac gacgacgtgg cggccagcgg 1021 gcgggcgagg ccgatcccgg cgtgattagc gaggatgagg atgagtttgt cttcgataat 1081 ctgtcgcaca agagttcggg tagctcgctg aacatccaac gcaccggttt gcagcccccg 1141 gcggcgttag gaacggcgcc taactttgcg ccgcgccatc catcgcctct gctgagcaat 1201 ggaggaggag tagcaggcgg cggcagcggg aaaggtaagc cagcgatttt gccagtgacg 1261 ctcgatgagg atgatgcgcc catcgacgcg gatatggaac agcttgagct cgatttcagt 1321 gtacgtgccc acgcccgcag cagcaacagc agcagcaccc tgccgccacc ctcgaagccg 1381 ccgcgcattc ccctggagca ggagcagccg gtggctgaaa gtctggagcg ggagaagcca 1441 aaggagaagc caagggagaa gcccaaggag gtggagagcg acaaagacga gtgggcctcg 1501 aagttgtatg gcggtggcaa gtacctggag atcggtagca gtgactcctt gaagcgacgc 1561 agctgggagg atcgagtgcc gctgcctgcc agcgtcgagg agccgccgcc aatgcccacg 1621 tccagttcgt cgtccagttc cagcgaggat agcgacgagg atgaggatga gcagccaccg 1681 cagacagctc cgccaccagt acccgtgcct gctcctgctg ctgctcctgc tccagtggca 1741 gccacctcct cctcgctctt ctcccccgaa gtggagcacc gcaactttga caccttcaac 1801 gccagcttcg ccaagtacga gcagcgcaac agcaccgcca tctttgccga tgagcccgag 1861 ttggatgatt tgacggcgga gctggagaag ccagtgccca cgcctacagc tcgtcccaag 1921 ccacagccgc gagctacggc tgatttgagg gctgaggagg aggaggctgc gaggcagcag 1981 cgcgccgagg aggatgcccg cctggaggcg gagctgcggc tgaatgagga gcggctgcgc 2041 gaggaggagg cggccatgca gcgggagatg gaggaggaga gggagaggga gcgacgaaag 2101 caattgcagc tggacgagca gcagaggcgc gaggcgaagc gctgggagga ggaccaaaga 2161 ctgctgagct tcgccaagcg atccacttcc ctcgaggagc cggtagccag tacagagaag 2221 gaggagacgg agccagcaga ggttgaagcg acagagccgg agcacaattt cctaacgccc 2281 gagcagtcgc ccaaggagtt ccagacgaac ggcagcggcg gcggggagca ctgggaaaag 2341 cggctgggca agttcaaata cggcaacaag cgagataaat acaacaacga caatgagagc 2401 aactcgccta gtcccaagtc cacggagcgc ataattattg gtcacgagaa gtcgggctcg 2461 catgcggagc gacgctcgga gatatccgcc cagctggcca agaaatacga gggcaagtcc 2521 cgggaggaac taatgctaat tgccaacgga atggagaacg aggctctgct gcagcgacag 2581 cgcgtcaagg agctggagga ctacctggac aacctgctgc tgcgcgtgat ggagacgcat 2641 ccgaagatct tgcagaatcc ctattcgcgc accacgtccg ccaagagtta taaaaattac 2701 atcaatatga atgactttct aaagtaagtg ctgcgcgcat gttgcaagtt gcatttaagt 2761 agacacttaa ccaacaacaa tccccaacaa caacaacaac aactacatca ccaactacac 2821 cacaaccccc aacaacaaca agaacaacta caagtgaggc aactccttcg aaaggaacaa 2881 caactatagc tggaagtcga acggctaaat agccaaaaac tggtcaccaa gcgtcaccaa 2941 ttgattcact tgacccacaa cagctggagg agatcggtgg cgcctacggg tgcgggtgca 3001 gaatcgaaac actaatccaa caccatgttg cctttgtcgt gaacagcgaa attcaagtgc 3061 tttctaaacc gtatttctaa gagtggggga ctaaactaaa ctaattgtac acgtactttg 3121 tccaatttgc ttggggagtg caaaattttg attgatattt tcgtagcatt cgtgttctct 3181 tatgtatgtt tgtttgcccc ccccccccac taaaacgaac taaattaatt gtactatata 3241 tgctacttac tactatgttg cgtttggcat tcgctgaacc atcgatttgc cttgattcga 3301 gtcccttgtc gtcgattgat tgaaattatc cgaaagtatt ttgtttattt tttttgtatg 3361 tccatttctt ttttttgttt tttgtaatat tgtgcaaaaa agagtttgag aagtttttgt 3421 aaagtgctgc gagggaaagt ggccttagtg gattaagttt taaattattt atgttttagc 3481 ggttaagcga aatgggggga aaaaaggggg atcgacccgg gtcccccgca aaaacaccac 3541 acacagttga aatatgttga tactacaatg attttactta ttgatataca cgcaaacaga 3601 ataaaaacat ttttaacatt aataacaaa